| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
17205969 |
3.A |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
RAP-DB Id for OsABA8ox1, OsABA8ox2, OsABA8ox3 (LOC_Os02g47470-Os02g0703600, LOC_Os08g36860-Os08g0472800 and LOC_Os09g28390-Os09g0457100). Gene copy number per 100ng of RNA was measured. |
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os02g47470 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
# |
# |
 1457.69 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os02g47470 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 1h |
# |
43232.03 |
|
| |
1 |
3 |
LOC_Os02g47470 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 2h |
# |
24061.35 |
|
| |
1 |
4 |
LOC_Os02g47470 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 4h |
# |
5497.9 |
|
| |
1 |
5 |
LOC_Os02g47470 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 8h |
# |
11092.81 |
|
| |
1 |
6 |
LOC_Os02g47470 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 12h |
# |
10791.4 |
|
| |
1 |
7 |
LOC_Os02g47470 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 24h |
# |
36582.83 |
|
| |
1 |
8 |
LOC_Os02g47470 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 48h |
# |
16816.3 |
|
|
| |
LOC_Os02g47470-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os08g36860 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
# |
# |
1351.72 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os08g36860 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 1h |
# |
1297.52 |
|
| |
2 |
3 |
LOC_Os08g36860 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 2h |
# |
1484.29 |
|
| |
2 |
4 |
LOC_Os08g36860 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 4h |
# |
824.57 |
|
| |
2 |
5 |
LOC_Os08g36860 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 8h |
# |
1010.76 |
|
| |
2 |
6 |
LOC_Os08g36860 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 12h |
# |
953.73 |
|
| |
2 |
7 |
LOC_Os08g36860 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 24h |
# |
1259.54 |
|
| |
2 |
8 |
LOC_Os08g36860 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 48h |
# |
1084.02 |
|
|
| |
LOC_Os08g36860-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
LOC_Os09g28390 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
# |
# |
888.01 grp_3_1_1 |
|
| |
3 |
2 |
LOC_Os09g28390 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 1h |
# |
0 |
|
| |
3 |
3 |
LOC_Os09g28390 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 2h |
# |
0 |
|
| |
3 |
4 |
LOC_Os09g28390 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 4h |
# |
0 |
|
| |
3 |
5 |
LOC_Os09g28390 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 8h |
# |
0 |
|
| |
3 |
6 |
LOC_Os09g28390 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 12h |
# |
0 |
|
| |
3 |
7 |
LOC_Os09g28390 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 24h |
# |
0 |
|
| |
3 |
8 |
LOC_Os09g28390 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 48h |
# |
0 |
|
|
| |
LOC_Os09g28390-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
|
|
| |
|
|
|
|
|
|
| Functional details |
|
PubMed Id |
Figure
|
Type |
Experimental Method |
Comment |
|
| |
17205969 |
3.A |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
RAP-DB Id for OsABA8ox1, OsABA8ox2, OsABA8ox3 (LOC_Os02g47470-Os02g0703600, LOC_Os08g36860-Os08g0472800 and LOC_Os09g28390-Os09g0457100). |
|
|
| |
S. No. |
Locus Id 1 |
GO Id |
Dep. loc |
Dep. type |
From |
To |
Motif |
|
|
| |
1 |
LOC_Os02g47470 |
GO:0030912 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
2 |
LOC_Os08g36860 |
GO:0030912 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
3 |
LOC_Os09g28390 |
GO:0030912 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
| |
LOC_Os02g47470-cytochrome P450, putative, expressed
LOC_Os08g36860-cytochrome P450, putative, expressed
LOC_Os09g28390-cytochrome P450, putative, expressed
|
GO:0030912-response to deep water
|
|
|
|
|
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|
