Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  17205969 3.A F Gene expression analysis (transcription) : Quantitative RT-PCR RAP-DB Id for OsABA8ox1, OsABA8ox2, OsABA8ox3 (LOC_Os02g47470-Os02g0703600, LOC_Os08g36860-Os08g0472800 and LOC_Os09g28390-Os09g0457100). Gene copy number per 100ng of RNA was measured.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os02g47470 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] # # 1457.69
grp_1_1_1
 
  1 2 LOC_Os02g47470 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 1h # 43232.03  
  1 3 LOC_Os02g47470 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 2h # 24061.35  
  1 4 LOC_Os02g47470 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 4h # 5497.9  
  1 5 LOC_Os02g47470 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 8h # 11092.81  
  1 6 LOC_Os02g47470 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 12h # 10791.4  
  1 7 LOC_Os02g47470 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 24h # 36582.83  
  1 8 LOC_Os02g47470 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 48h # 16816.3  
 
LOC_Os02g47470-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os08g36860 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] # # 1351.72
grp_2_1_1
 
  2 2 LOC_Os08g36860 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 1h # 1297.52  
  2 3 LOC_Os08g36860 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 2h # 1484.29  
  2 4 LOC_Os08g36860 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 4h # 824.57  
  2 5 LOC_Os08g36860 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 8h # 1010.76  
  2 6 LOC_Os08g36860 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 12h # 953.73  
  2 7 LOC_Os08g36860 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 24h # 1259.54  
  2 8 LOC_Os08g36860 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 48h # 1084.02  
 
LOC_Os08g36860-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os09g28390 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] # # 888.01
grp_3_1_1
 
  3 2 LOC_Os09g28390 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 1h # 0  
  3 3 LOC_Os09g28390 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 2h # 0  
  3 4 LOC_Os09g28390 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 4h # 0  
  3 5 LOC_Os09g28390 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 8h # 0  
  3 6 LOC_Os09g28390 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 12h # 0  
  3 7 LOC_Os09g28390 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 24h # 0  
  3 8 LOC_Os09g28390 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 48h # 0  
 
LOC_Os09g28390-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  17205969 3.A F Gene expression analysis (transcription) : Quantitative RT-PCR RAP-DB Id for OsABA8ox1, OsABA8ox2, OsABA8ox3 (LOC_Os02g47470-Os02g0703600, LOC_Os08g36860-Os08g0472800 and LOC_Os09g28390-Os09g0457100).  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os02g47470 GO:0030912 # # # # #            
  2 LOC_Os08g36860 GO:0030912 # # # # #            
  3 LOC_Os09g28390 GO:0030912 # # # # #            
 
LOC_Os02g47470-cytochrome P450, putative, expressed
LOC_Os08g36860-cytochrome P450, putative, expressed
LOC_Os09g28390-cytochrome P450, putative, expressed
GO:0030912-response to deep water
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India