Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  17205969 3.C F Gene expression analysis (transcription) : Quantitative RT-PCR OsNCED1-LOC_Os03g44380; OsNCED2- LOC_Os12g42280 and OsNCED3- LOC_Os07g05940(btained by primer BLAST in RGAP). Gene copy number per 100ng of RNA was measured.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os03g44380 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] # # 104.88129
grp_1_1_1
 
  1 2 LOC_Os03g44380 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 1h # 120.043  
  1 3 LOC_Os03g44380 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 2h # 35.75118  
  1 4 LOC_Os03g44380 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 4h # 52.00988  
  1 5 LOC_Os03g44380 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 8h # 23.457117  
  1 6 LOC_Os03g44380 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 12h # 12.393416  
  1 7 LOC_Os03g44380 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 24h # 22.092019  
  1 8 LOC_Os03g44380 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 48h # 12.119851  
 
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os12g42280 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] # # 210.85956
grp_2_1_1
 
  2 2 LOC_Os12g42280 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 1h # 209.62646  
  2 3 LOC_Os12g42280 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 2h # 106.76085  
  2 4 LOC_Os12g42280 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 4h # 17.004539  
  2 5 LOC_Os12g42280 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 8h # 148.01733  
  2 6 LOC_Os12g42280 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 12h # 128.2091  
  2 7 LOC_Os12g42280 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 24h # 13.318907  
  2 8 LOC_Os12g42280 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 48h # 18.647286  
 
LOC_Os12g42280-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os07g05940 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] # # 84.05501
grp_3_1_1
 
  3 2 LOC_Os07g05940 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 1h # 54.40663  
  3 3 LOC_Os07g05940 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 2h # 28.04102  
  3 4 LOC_Os07g05940 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 4h # 16.973236  
  3 5 LOC_Os07g05940 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 8h # 57.27565  
  3 6 LOC_Os07g05940 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 12h # 16.703755  
  3 7 LOC_Os07g05940 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 24h # 46.07721  
  3 8 LOC_Os07g05940 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[8d] MCE:1000010 48h # 8.7771945  
 
LOC_Os07g05940-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  17205969 3.C F Gene expression analysis (transcription) : Quantitative RT-PCR OsNCED1-LOC_Os03g44380; OsNCED2- LOC_Os12g42280 and OsNCED3- LOC_Os07g05940(btained by primer BLAST in RGAP).  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os03g44380 GO:0030912 # # # # #            
  2 LOC_Os07g05940 GO:0030912 # # # # #            
  3 LOC_Os12g42280 GO:0030912 # # # # #            
 
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
LOC_Os07g05940-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
LOC_Os12g42280-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
GO:0030912-response to deep water
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India