| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
17205969 |
3.C |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
OsNCED1-LOC_Os03g44380; OsNCED2- LOC_Os12g42280 and OsNCED3- LOC_Os07g05940(btained by primer BLAST in RGAP). Gene copy number per 100ng of RNA was measured. |
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
# |
# |
 104.88129 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 1h |
# |
120.043 |
|
| |
1 |
3 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 2h |
# |
35.75118 |
|
| |
1 |
4 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 4h |
# |
52.00988 |
|
| |
1 |
5 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 8h |
# |
23.457117 |
|
| |
1 |
6 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 12h |
# |
12.393416 |
|
| |
1 |
7 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 24h |
# |
22.092019 |
|
| |
1 |
8 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 48h |
# |
12.119851 |
|
|
| |
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os12g42280 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
# |
# |
210.85956 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os12g42280 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 1h |
# |
209.62646 |
|
| |
2 |
3 |
LOC_Os12g42280 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 2h |
# |
106.76085 |
|
| |
2 |
4 |
LOC_Os12g42280 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 4h |
# |
17.004539 |
|
| |
2 |
5 |
LOC_Os12g42280 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 8h |
# |
148.01733 |
|
| |
2 |
6 |
LOC_Os12g42280 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 12h |
# |
128.2091 |
|
| |
2 |
7 |
LOC_Os12g42280 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 24h |
# |
13.318907 |
|
| |
2 |
8 |
LOC_Os12g42280 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 48h |
# |
18.647286 |
|
|
| |
LOC_Os12g42280-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
# |
# |
84.05501 grp_3_1_1 |
|
| |
3 |
2 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 1h |
# |
54.40663 |
|
| |
3 |
3 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 2h |
# |
28.04102 |
|
| |
3 |
4 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 4h |
# |
16.973236 |
|
| |
3 |
5 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 8h |
# |
57.27565 |
|
| |
3 |
6 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 12h |
# |
16.703755 |
|
| |
3 |
7 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 24h |
# |
46.07721 |
|
| |
3 |
8 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009006[#] MCP:1000518[8d] |
MCE:1000010 48h |
# |
8.7771945 |
|
|
| |
LOC_Os07g05940-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000010-submergence stress
|
|
| |
|
|
|
|
|
|
| Functional details |
|
PubMed Id |
Figure
|
Type |
Experimental Method |
Comment |
|
| |
17205969 |
3.C |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
OsNCED1-LOC_Os03g44380; OsNCED2- LOC_Os12g42280 and OsNCED3- LOC_Os07g05940(btained by primer BLAST in RGAP). |
|
|
| |
S. No. |
Locus Id 1 |
GO Id |
Dep. loc |
Dep. type |
From |
To |
Motif |
|
|
| |
1 |
LOC_Os03g44380 |
GO:0030912 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
2 |
LOC_Os07g05940 |
GO:0030912 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
3 |
LOC_Os12g42280 |
GO:0030912 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
| |
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
LOC_Os07g05940-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
LOC_Os12g42280-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
|
GO:0030912-response to deep water
|
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