Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  17693452 5 F Gene expression analysis (transcription) : Semi-quantitative RT-PCR OSZEP1-LOC_Os04g37619; OsNCED1-LOC_Os03g44380; OsNCED2-LOC_Os12g42280; OsNCED3-LOC_Os07g05940. Determination of anther developmental stages was carried out using the AD method (AD = the distance in cm between the nodes of the flag leaf and the penultimate leaf). Here, Young Microspore stage refers to AD 0 to +2.5 cm & Early Bicellular stage refers to AD +6 to +8 cm.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os03g44380 # # 39947 CU:022 # WT # PO:0009066[#] PO:0001012[#] # # 1
grp_1_1_1
grp_1_1_2
grp_1_1_3
 
  1 2 LOC_Os03g44380 # # 39947 CU:022 # WT # PO:0009066[#] PO:0001012[#] EO:0007332 3d 12°C # 2.1929886  
  1 3 LOC_Os03g44380 # # 39947 CU:242 # WT # PO:0009066[#] PO:0001012[#] # # 0.88349193  
  1 4 LOC_Os03g44380 # # 39947 CU:242 # WT # PO:0009066[#] PO:0001012[#] EO:0007332 3d 12°C # 1.9394499  
 
LOC_Os03g44380-
39947-Oryza sativa japonica group
CU:022-cv. Doongara
CU:242-R31
WT-Wild Type
d-Days
PO:0001012-G early unicellular microspore stage
PO:0009066-anther
EO:0007332-cold air temperature regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os12g42280 # # 39947 CU:022 # WT # PO:0009066[#] PO:0001012[#] # # 1
grp_2_1_1
grp_2_1_2
grp_2_1_3
 
  2 2 LOC_Os12g42280 # # 39947 CU:022 # WT # PO:0009066[#] PO:0001012[#] EO:0007332 3d 12°C # 0.9170732  
  2 3 LOC_Os12g42280 # # 39947 CU:242 # WT # PO:0009066[#] PO:0001012[#] # # 0.30731708  
  2 4 LOC_Os12g42280 # # 39947 CU:242 # WT # PO:0009066[#] PO:0001012[#] EO:0007332 3d 12°C # 0.85365856  
 
LOC_Os12g42280-
39947-Oryza sativa japonica group
CU:022-cv. Doongara
CU:242-R31
WT-Wild Type
d-Days
PO:0001012-G early unicellular microspore stage
PO:0009066-anther
EO:0007332-cold air temperature regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os07g05940 # # 39947 CU:022 # WT # PO:0009066[#] PO:0001012[#] # # 1
grp_3_1_1
grp_3_1_2
grp_3_1_3
 
  3 2 LOC_Os07g05940 # # 39947 CU:022 # WT # PO:0009066[#] PO:0001012[#] EO:0007332 3d 12°C # 2.0377533  
  3 3 LOC_Os07g05940 # # 39947 CU:242 # WT # PO:0009066[#] PO:0001012[#] # # 1.0891598  
  3 4 LOC_Os07g05940 # # 39947 CU:242 # WT # PO:0009066[#] PO:0001012[#] EO:0007332 3d 12°C # 1.1226833  
 
LOC_Os07g05940-
39947-Oryza sativa japonica group
CU:022-cv. Doongara
CU:242-R31
WT-Wild Type
d-Days
PO:0001012-G early unicellular microspore stage
PO:0009066-anther
EO:0007332-cold air temperature regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os04g37619 # # 39947 CU:022 # WT # PO:0009066[#] PO:0001012[#] # # 1
grp_4_1_1
grp_4_1_2
grp_4_1_3
 
  4 2 LOC_Os04g37619 # # 39947 CU:022 # WT # PO:0009066[#] PO:0001012[#] EO:0007332 3d 12°C # 2.3717422  
  4 3 LOC_Os04g37619 # # 39947 CU:242 # WT # PO:0009066[#] PO:0001012[#] # # 0.99754786  
  4 4 LOC_Os04g37619 # # 39947 CU:242 # WT # PO:0009066[#] PO:0001012[#] EO:0007332 3d 12°C # 0.63223475  
 
LOC_Os04g37619-
39947-Oryza sativa japonica group
CU:022-cv. Doongara
CU:242-R31
WT-Wild Type
d-Days
PO:0001012-G early unicellular microspore stage
PO:0009066-anther
EO:0007332-cold air temperature regimen
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  17693452 5 F Gene expression analysis (transcription) : Semi-quantitative RT-PCR OSZEP1-LOC_Os04g37619; OsNCED1-LOC_Os03g44380; OsNCED2-LOC_Os12g42280; OsNCED3-LOC_Os07g05940.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os03g44380 GO:0009409 # # # # #            
  2 LOC_Os04g37619 GO:0009409 # # # # #            
  3 LOC_Os07g05940 GO:0009409 # # # # #            
  4 LOC_Os12g42280 GO:0009409 # # # # #            
 
LOC_Os03g44380-
LOC_Os04g37619-
LOC_Os07g05940-
LOC_Os12g42280-
GO:0009409-response to cold
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India