Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  19208695 4.B F Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession for OsNCED1-AY838897(LOC_Os02g47510);OsNCED2-AY838898( LOC_Os12g24800);OsNCED3-AY838899(LOC_Os03g44380);OsNCED4-AY838900(LOC_Os07g05940).  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os02g47510 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[#] # # 0.19675
grp_1_1_1
 
  1 2 LOC_Os02g47510 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[4h] # 4h # 0.25509  
  1 3 LOC_Os02g47510 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[6h] # 6h # 0.40606  
  1 4 LOC_Os02g47510 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.10694  
  1 5 LOC_Os02g47510 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.1097  
  1 6 LOC_Os02g47510 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.19628  
 
LOC_Os02g47510-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39946-Oryza sativa (indica group)
CU:238-Nanjing 11
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os12g24800 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[#] # # 0.4761
grp_2_1_1
 
  2 2 LOC_Os12g24800 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[4h] # 4h # 0.55771  
  2 3 LOC_Os12g24800 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[6h] # 6h # 1.32144  
  2 4 LOC_Os12g24800 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.14358  
  2 5 LOC_Os12g24800 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.10002  
  2 6 LOC_Os12g24800 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.1173  
 
LOC_Os12g24800-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39946-Oryza sativa (indica group)
CU:238-Nanjing 11
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os03g44380 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[#] # # 0.10405
grp_3_1_1
 
  3 2 LOC_Os03g44380 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[4h] # 4h # 0.11637  
  3 3 LOC_Os03g44380 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[6h] # 6h # 0.19799  
  3 4 LOC_Os03g44380 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.09538  
  3 5 LOC_Os03g44380 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.10977  
  3 6 LOC_Os03g44380 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.12711  
 
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39946-Oryza sativa (indica group)
CU:238-Nanjing 11
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os07g05940 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[#] # # 0.10646
grp_4_1_1
 
  4 2 LOC_Os07g05940 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[4h] # 4h # 0.11871  
  4 3 LOC_Os07g05940 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[6h] # 6h # 0.22352  
  4 4 LOC_Os07g05940 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.12938  
  4 5 LOC_Os07g05940 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.12085  
  4 6 LOC_Os07g05940 # # 39946 CU:238 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.12374  
 
LOC_Os07g05940-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39946-Oryza sativa (indica group)
CU:238-Nanjing 11
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India