Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  20838584 5.A F Gene expression analysis (transcription) : Quantitative RT-PCR OsAP2-39- LOC_Os04g52090; EUI-Os05g0482400/LOC_Os05g40384 & OsNCED1-Os03g0645900/LOC_Os03g44380.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os04g52090 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_1_1_1
 
  1 2 LOC_Os04g52090 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 1 PO:0025034[#] # # 0.07187131  
  1 3 LOC_Os04g52090 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 2 PO:0025034[#] # # 0.05390296  
  1 4 LOC_Os04g52090 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 3 PO:0025034[#] # # 0.15409593  
  1 5 LOC_Os04g52090 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 4 PO:0025034[#] # # 0.06787534  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TRI-Transgenic RNAi
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os05g40384 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_2_1_1
 
  2 2 LOC_Os05g40384 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 1 PO:0025034[#] # # 0.628684  
  2 3 LOC_Os05g40384 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 2 PO:0025034[#] # # 0.07243146  
  2 4 LOC_Os05g40384 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 3 PO:0025034[#] # # 0.8265003  
  2 5 LOC_Os05g40384 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 4 PO:0025034[#] # # 0.78754425  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os05g40384-cytochrome P450, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TRI-Transgenic RNAi
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os03g44380 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_3_1_1
 
  3 2 LOC_Os03g44380 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 1 PO:0025034[#] # # 0.20342611  
  3 3 LOC_Os03g44380 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 2 PO:0025034[#] # # 0.0804942  
  3 4 LOC_Os03g44380 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 3 PO:0025034[#] # # 0.30148053  
  3 5 LOC_Os03g44380 LOC_Os04g52090 PR:007 39947 CU:176 # TRI 4 PO:0025034[#] # # 0.4620733  
 
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TRI-Transgenic RNAi
WT-Wild Type
PO:0025034-leaf
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India