| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
20838584 |
5.B |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
OsAP2-39-LOC_Os04g52090;
EUI-Os05g0482400/LOC_Os05g40384;
GID1L2 -Os06g0214800/LOC_Os06g11130;
GID1L2B-Os07g0162900/LOC_Os07g06880;
GID1-Os05g0407500/LOC_Os05g33730;
GA-2Oxidase-Os04g0522500/LOC_Os04g44150;
SD1-Os01g0883800/LOC_Os01g66100;
OsNCED1-Os03g0645900/LOC_Os03g44380;
OsNCED3-Os07g0154100/LOC_Os07g05940;
OsZEP1-Os04g0448900/LOC_Os04g37619;
Auxin response factor-Os01g0753500/LOC_Os01g54990;
SAUR_B-Os02g0769100/LOC_Os02g52990;
Auxin-responsive -Os10g0510500/LOC_Os10g36703;
OsMax-1-Os02g0221900/LOC_Os02g12890. |
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os04g52090 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
 1 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os04g52090 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
52.2 |
|
|
| |
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os05g40384 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os05g40384 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
9.3 |
|
|
| |
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os05g40384-cytochrome P450, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
LOC_Os06g11130 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_3_1_1 |
|
| |
3 |
2 |
LOC_Os06g11130 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
2.2 |
|
|
| |
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os06g11130-gibberellin receptor GID1L2, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
4 |
1 |
LOC_Os07g06880 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_4_1_1 |
|
| |
4 |
2 |
LOC_Os07g06880 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
2.1 |
|
|
| |
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os07g06880-gibberellin receptor GID1L2, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
5 |
1 |
LOC_Os05g33730 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_5_1_1 |
|
| |
5 |
2 |
LOC_Os05g33730 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
2.1 |
|
|
| |
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os05g33730-gibberellin receptor GID1L2, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
6 |
1 |
LOC_Os04g44150 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_6_1_1 |
|
| |
6 |
2 |
LOC_Os04g44150 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
3.3 |
|
|
| |
LOC_Os04g44150-gibberellin 2-beta-dioxygenase 7, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
7 |
1 |
LOC_Os01g66100 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_7_1_1 |
|
| |
7 |
2 |
LOC_Os01g66100 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
2.4 |
|
|
| |
LOC_Os01g66100-gibberellin 20 oxidase 2, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
8 |
1 |
LOC_Os03g44380 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_8_1_1 |
|
| |
8 |
2 |
LOC_Os03g44380 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
3.7 |
|
|
| |
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
9 |
1 |
LOC_Os07g05940 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_9_1_1 |
|
| |
9 |
2 |
LOC_Os07g05940 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
2.2 |
|
|
| |
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os07g05940-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
10 |
1 |
LOC_Os04g37619 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_10_1_1 |
|
| |
10 |
2 |
LOC_Os04g37619 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
0.16 |
|
|
| |
LOC_Os04g37619-zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
11 |
1 |
LOC_Os01g54990 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_11_1_1 |
|
| |
11 |
2 |
LOC_Os01g54990 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
0.6 |
|
|
| |
LOC_Os01g54990-auxin response factor, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
12 |
1 |
LOC_Os02g52990 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_12_1_1 |
|
| |
12 |
2 |
LOC_Os02g52990 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
0.42 |
|
|
| |
LOC_Os02g52990-OsSAUR12 - Auxin-responsive SAUR gene family member, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
13 |
1 |
LOC_Os10g36703 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_13_1_1 |
|
| |
13 |
2 |
LOC_Os10g36703 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
0.32 |
|
|
| |
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os10g36703-CPuORF40 - conserved peptide uORF-containing transcript, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
14 |
1 |
LOC_Os02g12890 |
# |
# |
39947 |
CU:176 |
# |
WT |
# |
PO:0025034[#] |
# |
# |
1 grp_14_1_1 |
|
| |
14 |
2 |
LOC_Os02g12890 |
LOC_Os04g52090 |
PR:007 |
39947 |
CU:176 |
# |
TOE |
# |
PO:0025034[#] |
# |
# |
7.3 |
|
|
| |
LOC_Os02g12890-cytochrome P450, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
|
TOE-Transgenic overexpression
WT-Wild Type
|
PO:0025034-leaf
|
|
| |
|
|
|
|
|
|
