Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  20838584 5.B F Gene expression analysis (transcription) : Quantitative RT-PCR OsAP2-39-LOC_Os04g52090; EUI-Os05g0482400/LOC_Os05g40384; GID1L2 -Os06g0214800/LOC_Os06g11130; GID1L2B-Os07g0162900/LOC_Os07g06880; GID1-Os05g0407500/LOC_Os05g33730; GA-2Oxidase-Os04g0522500/LOC_Os04g44150; SD1-Os01g0883800/LOC_Os01g66100; OsNCED1-Os03g0645900/LOC_Os03g44380; OsNCED3-Os07g0154100/LOC_Os07g05940; OsZEP1-Os04g0448900/LOC_Os04g37619; Auxin response factor-Os01g0753500/LOC_Os01g54990; SAUR_B-Os02g0769100/LOC_Os02g52990; Auxin-responsive -Os10g0510500/LOC_Os10g36703; OsMax-1-Os02g0221900/LOC_Os02g12890.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os04g52090 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_1_1_1
 
  1 2 LOC_Os04g52090 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 52.2  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os05g40384 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_2_1_1
 
  2 2 LOC_Os05g40384 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 9.3  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os05g40384-cytochrome P450, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os06g11130 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_3_1_1
 
  3 2 LOC_Os06g11130 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 2.2  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os06g11130-gibberellin receptor GID1L2, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os07g06880 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_4_1_1
 
  4 2 LOC_Os07g06880 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 2.1  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os07g06880-gibberellin receptor GID1L2, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os05g33730 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_5_1_1
 
  5 2 LOC_Os05g33730 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 2.1  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os05g33730-gibberellin receptor GID1L2, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os04g44150 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_6_1_1
 
  6 2 LOC_Os04g44150 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 3.3  
 
LOC_Os04g44150-gibberellin 2-beta-dioxygenase 7, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  7 1 LOC_Os01g66100 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_7_1_1
 
  7 2 LOC_Os01g66100 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 2.4  
 
LOC_Os01g66100-gibberellin 20 oxidase 2, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  8 1 LOC_Os03g44380 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_8_1_1
 
  8 2 LOC_Os03g44380 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 3.7  
 
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  9 1 LOC_Os07g05940 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_9_1_1
 
  9 2 LOC_Os07g05940 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 2.2  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os07g05940-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  10 1 LOC_Os04g37619 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_10_1_1
 
  10 2 LOC_Os04g37619 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 0.16  
 
LOC_Os04g37619-zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  11 1 LOC_Os01g54990 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_11_1_1
 
  11 2 LOC_Os01g54990 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 0.6  
 
LOC_Os01g54990-auxin response factor, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  12 1 LOC_Os02g52990 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_12_1_1
 
  12 2 LOC_Os02g52990 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 0.42  
 
LOC_Os02g52990-OsSAUR12 - Auxin-responsive SAUR gene family member, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  13 1 LOC_Os10g36703 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_13_1_1
 
  13 2 LOC_Os10g36703 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 0.32  
 
LOC_Os04g52090-AP2 domain containing protein, expressed
LOC_Os10g36703-CPuORF40 - conserved peptide uORF-containing transcript, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  14 1 LOC_Os02g12890 # # 39947 CU:176 # WT # PO:0025034[#] # # 1
grp_14_1_1
 
  14 2 LOC_Os02g12890 LOC_Os04g52090 PR:007 39947 CU:176 # TOE # PO:0025034[#] # # 7.3  
 
LOC_Os02g12890-cytochrome P450, putative, expressed
LOC_Os04g52090-AP2 domain containing protein, expressed
PR:007-ubiquitin
39947-Oryza sativa japonica group
CU:176-Kaybonnet
TOE-Transgenic overexpression
WT-Wild Type
PO:0025034-leaf
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India