Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  21418356 5.B F Gene expression analysis (transcription) : Quantitative RT-PCR Os02g0204700-LOC_Os02g11020; Os06g0600400-LOC_Os06g39880; Os07g0647200-LOC_Os07g45290; Os01g0388000-LOC_Os01g29150.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os02g11020 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007162 # 1  
  1 2 LOC_Os02g11020 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007270 # 1.5234  
  1 3 LOC_Os02g11020 LOC_Os03g40540 # 39947 CU:100 # NM # PO:0008037[2w] EO:0007162 # 0.8340  
  1 4 LOC_Os02g11020 LOC_Os01g52050 # 39947 CU:100 # EMS # PO:0008037[2w] EO:0007162 # 0.7456  
 
LOC_Os01g52050-systemin receptor SR160 precursor, putative, expressed
LOC_Os02g11020-cytochrome P450 72A1, putative, expressed
LOC_Os03g40540-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
EMS-chemically induced mutation
NM-Naturally Occuring Mutant
WT-Wild Type
w-Weeks
PO:0008037-seedling
EO:0007162-continuous light regimen
EO:0007270-continuous dark (no light) regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os06g39880 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007162 # 1  
  2 2 LOC_Os06g39880 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007270 # 1.3451  
  2 3 LOC_Os06g39880 LOC_Os03g40540 # 39947 CU:100 # NM # PO:0008037[2w] EO:0007162 # 0.6703  
  2 4 LOC_Os06g39880 LOC_Os01g52050 # 39947 CU:100 # EMS # PO:0008037[2w] EO:0007162 # 1.3734  
 
LOC_Os01g52050-systemin receptor SR160 precursor, putative, expressed
LOC_Os03g40540-cytochrome P450, putative, expressed
LOC_Os06g39880-cytochrome P450 72A1, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
EMS-chemically induced mutation
NM-Naturally Occuring Mutant
WT-Wild Type
w-Weeks
PO:0008037-seedling
EO:0007162-continuous light regimen
EO:0007270-continuous dark (no light) regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os07g45290 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007162 # 1  
  3 2 LOC_Os07g45290 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007270 # 2.2221  
  3 3 LOC_Os07g45290 LOC_Os03g40540 # 39947 CU:100 # NM # PO:0008037[2w] EO:0007162 # 0.8584  
  3 4 LOC_Os07g45290 LOC_Os01g52050 # 39947 CU:100 # EMS # PO:0008037[2w] EO:0007162 # 1.1657  
 
LOC_Os01g52050-systemin receptor SR160 precursor, putative, expressed
LOC_Os03g40540-cytochrome P450, putative, expressed
LOC_Os07g45290-cytochrome P450 72A1, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
EMS-chemically induced mutation
NM-Naturally Occuring Mutant
WT-Wild Type
w-Weeks
PO:0008037-seedling
EO:0007162-continuous light regimen
EO:0007270-continuous dark (no light) regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os01g29150 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007162 # 1  
  4 2 LOC_Os01g29150 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007270 # 0.8124  
  4 3 LOC_Os01g29150 LOC_Os03g40540 # 39947 CU:100 # NM # PO:0008037[2w] EO:0007162 # 0.6801  
  4 4 LOC_Os01g29150 LOC_Os01g52050 # 39947 CU:100 # EMS # PO:0008037[2w] EO:0007162 # 1.4418  
 
LOC_Os01g29150-cytochrome P450 72A1, putative, expressed
LOC_Os01g52050-systemin receptor SR160 precursor, putative, expressed
LOC_Os03g40540-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
EMS-chemically induced mutation
NM-Naturally Occuring Mutant
WT-Wild Type
w-Weeks
PO:0008037-seedling
EO:0007162-continuous light regimen
EO:0007270-continuous dark (no light) regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os03g40540 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007162 # 1  
  5 2 LOC_Os03g40540 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007270 # 1.2058  
  5 3 LOC_Os03g40540 LOC_Os03g40540 # 39947 CU:100 # NM # PO:0008037[2w] EO:0007162 # 3.5945  
  5 4 LOC_Os03g40540 LOC_Os01g52050 # 39947 CU:100 # EMS # PO:0008037[2w] EO:0007162 # 2.3041  
 
LOC_Os01g52050-systemin receptor SR160 precursor, putative, expressed
LOC_Os03g40540-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
EMS-chemically induced mutation
NM-Naturally Occuring Mutant
WT-Wild Type
w-Weeks
PO:0008037-seedling
EO:0007162-continuous light regimen
EO:0007270-continuous dark (no light) regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os01g52050 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007162 # 1  
  6 2 LOC_Os01g52050 # # 39947 CU:100 # WT # PO:0008037[2w] EO:0007270 # 3.2701  
  6 3 LOC_Os01g52050 LOC_Os03g40540 # 39947 CU:100 # NM # PO:0008037[2w] EO:0007162 # 1.3201  
  6 4 LOC_Os01g52050 LOC_Os01g52050 # 39947 CU:100 # EMS # PO:0008037[2w] EO:0007162 # 1.3196  
 
LOC_Os01g52050-systemin receptor SR160 precursor, putative, expressed
LOC_Os03g40540-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
EMS-chemically induced mutation
NM-Naturally Occuring Mutant
WT-Wild Type
w-Weeks
PO:0008037-seedling
EO:0007162-continuous light regimen
EO:0007270-continuous dark (no light) regimen
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India