| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
22057936 |
7 |
F |
Stress tolerance assay |
To quantitate responses to ultraviolet
radiation stress, 100-μl diluted 10-fold samples were plated on IPTG LB and directly
exposed to ultraviolet radiation at a wave length of 254 nm (80 μW/cm2) for 5, 7.5, 10,
12.5, 15, and 20 min of time gradient, respectively. the results suggested that the OsLEA4 gene also stimulate the resistance to ultraviolet radiation stress |
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative grading |
|
| |
1 |
1 |
LOC_Os06g02040 |
# |
PR:99 |
469008 |
# |
# |
TC |
# |
#[#] |
# |
MCT:1000074 |
 100.03262 |
|
| |
1 |
2 |
LOC_Os06g02040 |
LOC_Os06g02040 |
PR:99 |
469008 |
# |
# |
TOE |
# |
#[#] |
# |
MCT:1000074 |
100.03262 |
|
|
| |
LOC_Os06g02040-late embryogenesis abundant group 1, putative, expressed
PR:99-T7 Promoter from bacteriophage
469008-Eschenchia coli b121 (DE3)
|
TC-Empty vector
TOE-Transgenic overexpression
|
MCT:1000074-cell viability
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative grading |
|
| |
2 |
1 |
LOC_Os06g02040 |
# |
PR:99 |
469008 |
# |
# |
TC |
# |
#[#] |
EO:0007222 80 5m |
MCT:1000074 |
99.2496 |
|
| |
2 |
2 |
LOC_Os06g02040 |
LOC_Os06g02040 |
PR:99 |
469008 |
# |
# |
TOE |
# |
#[#] |
EO:0007222 80 5m |
MCT:1000074 |
99.2496 |
|
|
| |
LOC_Os06g02040-late embryogenesis abundant group 1, putative, expressed
PR:99-T7 Promoter from bacteriophage
469008-Eschenchia coli b121 (DE3)
|
TC-Empty vector
TOE-Transgenic overexpression
m-Minutes
|
EO:0007222-UV light regimen
MCT:1000074-cell viability
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative grading |
|
| |
3 |
1 |
LOC_Os06g02040 |
# |
PR:99 |
469008 |
# |
# |
TC |
# |
#[#] |
EO:0007222 80 8m |
MCT:1000074 |
92.5938 |
|
| |
3 |
2 |
LOC_Os06g02040 |
LOC_Os06g02040 |
PR:99 |
469008 |
# |
# |
TOE |
# |
#[#] |
EO:0007222 80 8m |
MCT:1000074 |
95.9217 |
|
|
| |
LOC_Os06g02040-late embryogenesis abundant group 1, putative, expressed
PR:99-T7 Promoter from bacteriophage
469008-Eschenchia coli b121 (DE3)
|
TC-Empty vector
TOE-Transgenic overexpression
m-Minutes
|
EO:0007222-UV light regimen
MCT:1000074-cell viability
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative grading |
|
| |
4 |
1 |
LOC_Os06g02040 |
# |
PR:99 |
469008 |
# |
# |
TC |
# |
#[#] |
EO:0007222 80 10m |
MCT:1000074 |
72.43067 |
|
| |
4 |
2 |
LOC_Os06g02040 |
LOC_Os06g02040 |
PR:99 |
469008 |
# |
# |
TOE |
# |
#[#] |
EO:0007222 80 10m |
MCT:1000074 |
83.98042 |
|
|
| |
LOC_Os06g02040-late embryogenesis abundant group 1, putative, expressed
PR:99-T7 Promoter from bacteriophage
469008-Eschenchia coli b121 (DE3)
|
TC-Empty vector
TOE-Transgenic overexpression
m-Minutes
|
EO:0007222-UV light regimen
MCT:1000074-cell viability
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative grading |
|
| |
5 |
1 |
LOC_Os06g02040 |
# |
PR:99 |
469008 |
# |
# |
TC |
# |
#[#] |
EO:0007222 80 13 |
MCT:1000074 |
41.1093 |
|
| |
5 |
2 |
LOC_Os06g02040 |
LOC_Os06g02040 |
PR:99 |
469008 |
# |
# |
TOE |
# |
#[#] |
EO:0007222 80 13 |
MCT:1000074 |
57.1615 |
|
|
| |
LOC_Os06g02040-late embryogenesis abundant group 1, putative, expressed
PR:99-T7 Promoter from bacteriophage
469008-Eschenchia coli b121 (DE3)
|
TC-Empty vector
TOE-Transgenic overexpression
|
EO:0007222-UV light regimen
MCT:1000074-cell viability
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative grading |
|
| |
6 |
1 |
LOC_Os06g02040 |
# |
PR:99 |
469008 |
# |
# |
TC |
# |
#[#] |
EO:0007222 80 15m |
MCT:1000074 |
1.76183 |
|
| |
6 |
2 |
LOC_Os06g02040 |
LOC_Os06g02040 |
PR:99 |
469008 |
# |
# |
TOE |
# |
#[#] |
EO:0007222 80 15m |
MCT:1000074 |
6.06852 |
|
|
| |
LOC_Os06g02040-late embryogenesis abundant group 1, putative, expressed
PR:99-T7 Promoter from bacteriophage
469008-Eschenchia coli b121 (DE3)
|
TC-Empty vector
TOE-Transgenic overexpression
m-Minutes
|
EO:0007222-UV light regimen
MCT:1000074-cell viability
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative grading |
|
| |
7 |
1 |
LOC_Os06g02040 |
# |
PR:99 |
469008 |
# |
# |
TC |
# |
#[#] |
EO:0007222 80 20m |
MCT:1000074 |
0 |
|
| |
7 |
2 |
LOC_Os06g02040 |
LOC_Os06g02040 |
PR:99 |
469008 |
# |
# |
TOE |
# |
#[#] |
EO:0007222 80 20m |
MCT:1000074 |
0.7 |
|
|
| |
LOC_Os06g02040-late embryogenesis abundant group 1, putative, expressed
PR:99-T7 Promoter from bacteriophage
469008-Eschenchia coli b121 (DE3)
|
TC-Empty vector
TOE-Transgenic overexpression
m-Minutes
|
EO:0007222-UV light regimen
MCT:1000074-cell viability
|
|
| |
|
|
|
|
|
|
| Functional details |
|
PubMed Id |
Figure
|
Type |
Experimental Method |
Comment |
|
| |
22057936 |
7 |
F |
Stress tolerance assay |
Cell Viability of E.coli transformants under UV radiation stress. |
|
|
| |
S. No. |
Locus Id 1 |
GO Id |
Dep. loc |
Dep. type |
From |
To |
Motif |
|
|
| |
1 |
LOC_Os06g02040 |
GO:0006950 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
2 |
LOC_Os06g02040 |
GO:0009314 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
3 |
LOC_Os06g02040 |
GO:0009411 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
4 |
LOC_Os06g02040 |
GO:0009628 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
5 |
LOC_Os06g02040 |
GO:0050896 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
| |
LOC_Os06g02040-late embryogenesis abundant group 1, putative, expressed
|
GO:0006950-response to stress
GO:0009314-response to radiation
GO:0009411-response to UV
GO:0009628-response to abiotic stimulus
GO:0050896-response to stimulus
|
|
|
|
|
