Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  22589467 1.C F Gene expression analysis (transcription) : Quantitative RT-PCR RAP-db Id for OsNRAMP5 (LOC_Os07g15370)-Os07g0257200. Statistically significant difference was calculated by Dunnett’s test, at P < 0.05.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009005[#] MCP:1000518[14d] # 7d # 1
grp_1_1_1
grp_1_1_2
 
  1 2 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009005[#] MCP:1000518[14d] MCE:1000163 7d # 1.6518636  
  1 3 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009005[#] MCP:1000518[14d] MCE:1000143 7d # 1.8595176  
  1 4 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009005[#] MCP:1000518[14d] MCE:1000164 7d # 0.9734161  
  1 5 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009005[#] MCP:1000518[14d] MCE:1000162 7d # 0.8685351  
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
d-Days
MCP:1000518-seedling development stage
PO:0009005-root
MCE:1000143-iron deficiency treatment
MCE:1000162-copper deficiency treatment
MCE:1000163-zinc deficiency treatment
MCE:1000164-manganese deficiency treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[14d] # 7d # 0.19457474
grp_2_1_1
 
  2 2 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[14d] MCE:1000163 7d # 0.12723048  
  2 3 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[14d] MCE:1000143 7d # 0.16617255  
  2 4 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[14d] MCE:1000164 7d # 0.17372921  
  2 5 LOC_Os07g15370 # # 39947 CU:100 # WT # PO:0009006[#] MCP:1000518[14d] MCE:1000162 7d # 0.19384742  
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
d-Days
MCP:1000518-seedling development stage
PO:0009006-shoot system
MCE:1000143-iron deficiency treatment
MCE:1000162-copper deficiency treatment
MCE:1000163-zinc deficiency treatment
MCE:1000164-manganese deficiency treatment
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  22589467 1.C F Gene expression analysis (transcription) : Quantitative RT-PCR RAP-db Id for OsNRAMP5 (LOC_Os07g15370)-Os07g0257200. Os Nramp5 was only slightly induced in roots by a Zn and Fe deficiency and was unaffected by a Mn and Cu deficiency.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os07g15370 GO:0009267 # # # # #            
  2 LOC_Os07g15370 GO:0010106 # # # # #            
  3 LOC_Os07g15370 GO:0034224 # # # # #            
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
GO:0009267-cellular response to starvation
GO:0010106-cellular response to iron ion starvation
GO:0034224-cellular response to zinc ion starvation
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India