Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  22589467 9.C F Ion accumulation assay : Inductively Coupled Plasma Mass Spectrometry (ICP-MS) RAP-db Id for OsNRAMP5 (LOC_Os07g15370)-Os07g0257200. The seedlings (28 d old) were exposed to a nutrient solution without Mn for 1 week and then subjected to a uptake solution containing various concentrations of Cd.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Milligrams/kilogram dry weight  
  1 1 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] # 30m 25°C TO:0006059 0.97175354
grp_1_1_1
grp_1_1_2
grp_1_1_3
 
  1 2 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] # 30m 4°C TO:0006059 0.97175354
grp_1_2_1
grp_1_2_2
 
  1 3 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] # 30m 25°C TO:0006059 0
grp_1_3_1
grp_1_3_2
 
  1 4 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] # 30m 4°C TO:0006059 0
grp_1_4_1
 
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
TDNA-TDNA mutant
WT-Wild Type
d-Days
m-Minutes
MCP:1000518-seedling development stage
PO:0009005-root
TO:0006059-cadmium concentration
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Milligrams/kilogram dry weight  
  2 1 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 0.1然 30m 25°C TO:0006059 13.926667
grp_2_1_1
grp_2_1_2
 
  2 2 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 0.1然 30m 4°C TO:0006059 4.74757
grp_2_2_1
 
  2 3 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 0.1然 30m 25°C TO:0006059 1.0756952
grp_2_3_1
 
  2 4 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 0.1然 30m 4°C TO:0006059 1.0755265  
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
m-Minutes
MCP:1000518-seedling development stage
PO:0009005-root
MCE:1000173-cadmium nutrient regimen
TO:0006059-cadmium concentration
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Milligrams/kilogram dry weight  
  3 1 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 0.5然 30m 25°C TO:0006059 23.207512
grp_3_1_1
grp_3_1_2
 
  3 2 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 0.5然 30m 4°C TO:0006059 6.036548
grp_3_2_1
 
  3 3 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 0.5然 30m 25°C TO:0006059 1.8252227
grp_3_3_1
 
  3 4 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 0.5然 30m 4°C TO:0006059 1.0691144  
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
m-Minutes
MCP:1000518-seedling development stage
PO:0009005-root
MCE:1000173-cadmium nutrient regimen
TO:0006059-cadmium concentration
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Milligrams/kilogram dry weight  
  4 1 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 1然 30m 25°C TO:0006059 30.431965
grp_4_1_1
grp_4_1_2
 
  4 2 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 1然 30m 4°C TO:0006059 7.321814
grp_4_2_1
 
  4 3 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 1然 30m 25°C TO:0006059 3.2183113
grp_4_3_1
 
  4 4 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 1然 30m 4°C TO:0006059 2.462203  
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
m-Minutes
MCP:1000518-seedling development stage
PO:0009005-root
MCE:1000173-cadmium nutrient regimen
TO:0006059-cadmium concentration
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Milligrams/kilogram dry weight  
  5 1 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 2然 30m 25°C TO:0006059 38.833694
grp_5_1_1
grp_5_1_2
 
  5 2 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 2然 30m 4°C TO:0006059 10.000338
grp_5_2_1
 
  5 3 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 2然 30m 25°C TO:0006059 5.356709
grp_5_3_1
 
  5 4 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 2然 30m 4°C TO:0006059 4.6007695  
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
m-Minutes
MCP:1000518-seedling development stage
PO:0009005-root
MCE:1000173-cadmium nutrient regimen
TO:0006059-cadmium concentration
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Milligrams/kilogram dry weight  
  6 1 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 5然 30m 25°C TO:0006059 48.920254
grp_6_1_1
grp_6_1_2
 
  6 2 LOC_Os07g15370 # # 39947 CU:138 # WT # PO:0009005[#] MCP:1000518[28d] MCE:1000173 5然 30m 4°C TO:0006059 18.898489
grp_6_2_1
 
  6 3 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 5然 30m 25°C TO:0006059 12.743318
grp_6_3_1
 
  6 4 LOC_Os07g15370 LOC_Os07g15370 # 39947 CU:138 # TDNA # PO:0009005[#] MCP:1000518[28d] MCE:1000173 5然 30m 4°C TO:0006059 11.123447  
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
m-Minutes
MCP:1000518-seedling development stage
PO:0009005-root
MCE:1000173-cadmium nutrient regimen
TO:0006059-cadmium concentration
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  22589467 9.C F Ion accumulation assay : Inductively Coupled Plasma Mass Spectrometry (ICP-MS) RAP-db Id for OsNRAMP5 (LOC_Os07g15370)-Os07g0257200.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os07g15370 GO:0015691 # # # # #            
 
LOC_Os07g15370-metal transporter Nramp6, putative, expressed
GO:0015691-cadmium ion transport
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India