Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24237627 6 F Gene expression analysis (transcription) : Quantitative RT-PCR OsDUF1618 (26)-LOC_Os02g02240; OsDUF1618 (35)-LOC_Os03g54200; OsDUF1618 (51)-LOC_Os03g14310; OsDUF1618 (59)-LOC_Os05g18660; OsDUF1618 (112)-LOC_Os12g39970; OsDUF1618 (113)-LOC_Os12g39710. (RAP Ids are given in suppl.)  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0009005[#] MCP:1000518[#] # # 0.01898
grp_1_1_1
 
  1 2 LOC_Os02g02240 # # 39946 CU:038 # WT # PO:0009005[#] MCP:1000518[#] # # 0.00582  
  1 3 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0009047[#] MCP:1000518[#] # # 0.00395
grp_1_3_1
 
  1 4 LOC_Os02g02240 # # 39946 CU:038 # WT # PO:0009047[#] MCP:1000518[#] # # 0.00617  
  1 5 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0025034[#] MCP:1000518[#] # # 0.14404
grp_1_5_1
 
  1 6 LOC_Os02g02240 # # 39946 CU:038 # WT # PO:0025034[#] MCP:1000518[#] # # 0.02609  
  1 7 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0009049[#] MCP:1000520[#] # # 0.01304
grp_1_7_1
 
  1 8 LOC_Os02g02240 # # 39946 CU:038 # WT # PO:0009049[#] MCP:1000520[#] # # 0.00758  
 
LOC_Os02g02240-expressed protein
39946-Oryza sativa (indica group)
39947-Oryza sativa japonica group
CU:038-cv. 93-11
CU:121-cv. Taichung 65
WT-Wild Type
MCP:1000518-seedling development stage
MCP:1000520-young inflorescence stage
PO:0009005-root
PO:0009047-stem
PO:0009049-inflorescence
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0009005[#] MCP:1000518[#] # # 0.04093
grp_2_1_1
 
  2 2 LOC_Os03g54200 # # 39946 CU:038 # WT # PO:0009005[#] MCP:1000518[#] # # 0.00497  
  2 3 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0009047[#] MCP:1000518[#] # # 0.08335
grp_2_3_1
 
  2 4 LOC_Os03g54200 # # 39946 CU:038 # WT # PO:0009047[#] MCP:1000518[#] # # 0.0086  
  2 5 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0025034[#] MCP:1000518[#] # # 0.15694
grp_2_5_1
 
  2 6 LOC_Os03g54200 # # 39946 CU:038 # WT # PO:0025034[#] MCP:1000518[#] # # 0.03579  
  2 7 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0009049[#] MCP:1000520[#] # # 0.11971
grp_2_7_1
 
  2 8 LOC_Os03g54200 # # 39946 CU:038 # WT # PO:0009049[#] MCP:1000520[#] # # 0.01518  
 
LOC_Os03g54200-expressed protein
39946-Oryza sativa (indica group)
39947-Oryza sativa japonica group
CU:038-cv. 93-11
CU:121-cv. Taichung 65
WT-Wild Type
MCP:1000518-seedling development stage
MCP:1000520-young inflorescence stage
PO:0009005-root
PO:0009047-stem
PO:0009049-inflorescence
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0009005[#] MCP:1000518[#] # # 0.01777
grp_3_1_1
 
  3 2 LOC_Os03g14310 # # 39946 CU:038 # WT # PO:0009005[#] MCP:1000518[#] # # 0.00249  
  3 3 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0009047[#] MCP:1000518[#] # # 0.0022
grp_3_3_1
 
  3 4 LOC_Os03g14310 # # 39946 CU:038 # WT # PO:0009047[#] MCP:1000518[#] # # 0.03841  
  3 5 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0025034[#] MCP:1000518[#] # # 0.00403
grp_3_5_1
 
  3 6 LOC_Os03g14310 # # 39946 CU:038 # WT # PO:0025034[#] MCP:1000518[#] # # 0.08197  
  3 7 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0009049[#] MCP:1000520[#] # # 0.00864
grp_3_7_1
 
  3 8 LOC_Os03g14310 # # 39946 CU:038 # WT # PO:0009049[#] MCP:1000520[#] # # 0.06258  
 
LOC_Os03g14310-expressed protein
39946-Oryza sativa (indica group)
39947-Oryza sativa japonica group
CU:038-cv. 93-11
CU:121-cv. Taichung 65
WT-Wild Type
MCP:1000518-seedling development stage
MCP:1000520-young inflorescence stage
PO:0009005-root
PO:0009047-stem
PO:0009049-inflorescence
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0009005[#] MCP:1000518[#] # # 0.84917
grp_4_1_1
 
  4 2 LOC_Os05g18660 # # 39946 CU:038 # WT # PO:0009005[#] MCP:1000518[#] # # 0.01229  
  4 3 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0009047[#] MCP:1000518[#] # # 0.18735
grp_4_3_1
 
  4 4 LOC_Os05g18660 # # 39946 CU:038 # WT # PO:0009047[#] MCP:1000518[#] # # 0.01713  
  4 5 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0025034[#] MCP:1000518[#] # # 0.24257
grp_4_5_1
 
  4 6 LOC_Os05g18660 # # 39946 CU:038 # WT # PO:0025034[#] MCP:1000518[#] # # 0.07235  
  4 7 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0009049[#] MCP:1000520[#] # # 0.33269
grp_4_7_1
 
  4 8 LOC_Os05g18660 # # 39946 CU:038 # WT # PO:0009049[#] MCP:1000520[#] # # 0.03456  
 
LOC_Os05g18660-OsFBDUF24 - F-box and DUF domain containing protein, expressed
39946-Oryza sativa (indica group)
39947-Oryza sativa japonica group
CU:038-cv. 93-11
CU:121-cv. Taichung 65
WT-Wild Type
MCP:1000518-seedling development stage
MCP:1000520-young inflorescence stage
PO:0009005-root
PO:0009047-stem
PO:0009049-inflorescence
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0009005[#] MCP:1000518[#] # # 0.40855
grp_5_1_1
 
  5 2 LOC_Os12g39970 # # 39946 CU:038 # WT # PO:0009005[#] MCP:1000518[#] # # 0.10362  
  5 3 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0009047[#] MCP:1000518[#] # # 0.07208
grp_5_3_1
 
  5 4 LOC_Os12g39970 # # 39946 CU:038 # WT # PO:0009047[#] MCP:1000518[#] # # 0.17792  
  5 5 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0025034[#] MCP:1000518[#] # # 0.09508
grp_5_5_1
 
  5 6 LOC_Os12g39970 # # 39946 CU:038 # WT # PO:0025034[#] MCP:1000518[#] # # 0.55226  
  5 7 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0009049[#] MCP:1000520[#] # # 0.12884
grp_5_7_1
 
  5 8 LOC_Os12g39970 # # 39946 CU:038 # WT # PO:0009049[#] MCP:1000520[#] # # 0.18062  
 
LOC_Os12g39970-expressed protein
39946-Oryza sativa (indica group)
39947-Oryza sativa japonica group
CU:038-cv. 93-11
CU:121-cv. Taichung 65
WT-Wild Type
MCP:1000518-seedling development stage
MCP:1000520-young inflorescence stage
PO:0009005-root
PO:0009047-stem
PO:0009049-inflorescence
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0009005[#] MCP:1000518[#] # # 0.0473
grp_6_1_1
 
  6 2 LOC_Os12g39710 # # 39946 CU:038 # WT # PO:0009005[#] MCP:1000518[#] # # -0.00134  
  6 3 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0009047[#] MCP:1000518[#] # # 0.02493
grp_6_3_1
 
  6 4 LOC_Os12g39710 # # 39946 CU:038 # WT # PO:0009047[#] MCP:1000518[#] # # 0.00556  
  6 5 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0025034[#] MCP:1000518[#] # # 0.32127
grp_6_5_1
 
  6 6 LOC_Os12g39710 # # 39946 CU:038 # WT # PO:0025034[#] MCP:1000518[#] # # 0.02222  
  6 7 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0009049[#] MCP:1000520[#] # # 0.07453
grp_6_7_1
 
  6 8 LOC_Os12g39710 # # 39946 CU:038 # WT # PO:0009049[#] MCP:1000520[#] # # 0.00961  
 
LOC_Os12g39710-expressed protein
39946-Oryza sativa (indica group)
39947-Oryza sativa japonica group
CU:038-cv. 93-11
CU:121-cv. Taichung 65
WT-Wild Type
MCP:1000518-seedling development stage
MCP:1000520-young inflorescence stage
PO:0009005-root
PO:0009047-stem
PO:0009049-inflorescence
PO:0025034-leaf
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India