| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
24237627 |
7 |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
OsDUF1618 (26)-LOC_Os02g02240; OsDUF1618 (35)-LOC_Os03g54200; OsDUF1618 (51)-LOC_Os03g14310; OsDUF1618 (59)-LOC_Os05g18660; OsDUF1618 (112)-LOC_Os12g39970; OsDUF1618 (113)-LOC_Os12g39710. (RAP Ids are given in suppl.) Isogenic/polymorphic line of cultivar T65 is used viz. TISL5. Tissue and treatment details are taken from back ref. Significant difference is considered as 0.01< P <0.05; and P <0.01.
|
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os02g02240 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# |
# |
 0.04 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os02g02240 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007332 12h 4°C |
# |
0.01882 |
|
| |
1 |
3 |
LOC_Os02g02240 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007319 2h 42°C MCE:1000280 24h |
# |
0.04725 |
|
| |
1 |
4 |
LOC_Os02g02240 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.08195 |
|
| |
1 |
5 |
LOC_Os02g02240 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 23% 12h |
# |
0.06314 |
|
| |
1 |
6 |
LOC_Os02g02240 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007187 1mM 24h |
# |
0.03763 |
|
|
| |
LOC_Os02g02240-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os03g54200 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# |
# |
0.03333 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os03g54200 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007332 12h 4°C |
# |
0.07263 |
|
| |
2 |
3 |
LOC_Os03g54200 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007319 2h 42°C MCE:1000280 24h |
# |
0.02772 |
|
| |
2 |
4 |
LOC_Os03g54200 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.07474 |
|
| |
2 |
5 |
LOC_Os03g54200 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 23% 12h |
# |
0.04842 |
|
| |
2 |
6 |
LOC_Os03g54200 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007187 1mM 24h |
# |
0.02737 |
|
|
| |
LOC_Os03g54200-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
LOC_Os03g14310 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# |
# |
0.21515 grp_3_1_1 |
|
| |
3 |
2 |
LOC_Os03g14310 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007332 12h 4°C |
# |
0.33837 |
|
| |
3 |
3 |
LOC_Os03g14310 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007319 2h 42°C MCE:1000280 24h |
# |
0.19468 |
|
| |
3 |
4 |
LOC_Os03g14310 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.53995 |
|
| |
3 |
5 |
LOC_Os03g14310 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 23% 12h |
# |
0.35846 |
|
| |
3 |
6 |
LOC_Os03g14310 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007187 1mM 24h |
# |
0.24547 |
|
|
| |
LOC_Os03g14310-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
4 |
1 |
LOC_Os05g18660 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# |
# |
0.73518 grp_4_1_1 |
|
| |
4 |
2 |
LOC_Os05g18660 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007332 12h 4°C |
# |
1.25692 |
|
| |
4 |
3 |
LOC_Os05g18660 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007319 2h 42°C MCE:1000280 24h |
# |
0.65217 |
|
| |
4 |
4 |
LOC_Os05g18660 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
2.59684 |
|
| |
4 |
5 |
LOC_Os05g18660 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 23% 12h |
# |
1.70751 |
|
| |
4 |
6 |
LOC_Os05g18660 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007187 1mM 24h |
# |
0.48617 |
|
|
| |
LOC_Os05g18660-OsFBDUF24 - F-box and DUF domain containing protein, expressed
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
5 |
1 |
LOC_Os12g39970 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# |
# |
0.14353 grp_5_1_1 |
|
| |
5 |
2 |
LOC_Os12g39970 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007332 12h 4°C |
# |
0.29871 |
|
| |
5 |
3 |
LOC_Os12g39970 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007319 2h 42°C MCE:1000280 24h |
# |
0.27026 |
|
| |
5 |
4 |
LOC_Os12g39970 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.18491 |
|
| |
5 |
5 |
LOC_Os12g39970 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 23% 12h |
# |
0.11767 |
|
| |
5 |
6 |
LOC_Os12g39970 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007187 1mM 24h |
# |
0.06078 |
|
|
| |
LOC_Os12g39970-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
6 |
1 |
LOC_Os12g39710 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# |
# |
0.15889 grp_6_1_1 |
|
| |
6 |
2 |
LOC_Os12g39710 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007332 12h 4°C |
# |
0.14726 |
|
| |
6 |
3 |
LOC_Os12g39710 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007319 2h 42°C MCE:1000280 24h |
# |
0.13135 |
|
| |
6 |
4 |
LOC_Os12g39710 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.24097 |
|
| |
6 |
5 |
LOC_Os12g39710 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 23% 12h |
# |
0.17355 |
|
| |
6 |
6 |
LOC_Os12g39710 |
# |
# |
39947 |
CU:121 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007187 1mM 24h |
# |
0.06429 |
|
|
| |
LOC_Os12g39710-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
|
|
| |
|
|
|
|
|
|
| Functional details |
|
PubMed Id |
Figure
|
Type |
Experimental Method |
Comment |
|
| |
24237627 |
7 |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
OsDUF1618 (26)-LOC_Os02g02240; OsDUF1618 (35)-LOC_Os03g54200; OsDUF1618 (51)-LOC_Os03g14310; OsDUF1618 (59)-LOC_Os05g18660; OsDUF1618 (112)-LOC_Os12g39970; OsDUF1618 (113)-LOC_Os12g39710. (RAP Ids are given in suppl.) |
|
|
| |
S. No. |
Locus Id 1 |
GO Id |
Dep. loc |
Dep. type |
From |
To |
Motif |
|
|
| |
1 |
LOC_Os02g02240 |
GO:0009409 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
2 |
LOC_Os02g02240 |
GO:0009651 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
3 |
LOC_Os03g14310 |
GO:0009409 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
4 |
LOC_Os03g14310 |
GO:0009414 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
5 |
LOC_Os03g14310 |
GO:0009651 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
6 |
LOC_Os03g54200 |
GO:0009409 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
7 |
LOC_Os03g54200 |
GO:0009651 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
8 |
LOC_Os05g18660 |
GO:0009409 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
9 |
LOC_Os05g18660 |
GO:0009414 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
10 |
LOC_Os05g18660 |
GO:0009651 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
11 |
LOC_Os12g39710 |
GO:0009651 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
12 |
LOC_Os12g39710 |
GO:0009751 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
13 |
LOC_Os12g39970 |
GO:0009408 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
14 |
LOC_Os12g39970 |
GO:0009409 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
15 |
LOC_Os12g39970 |
GO:0009751 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
| |
LOC_Os02g02240-expressed protein
LOC_Os03g14310-expressed protein
LOC_Os03g54200-expressed protein
LOC_Os05g18660-OsFBDUF24 - F-box and DUF domain containing protein, expressed
LOC_Os12g39710-expressed protein
LOC_Os12g39970-expressed protein
|
GO:0009408-response to heat
GO:0009409-response to cold
GO:0009414-response to water deprivation
GO:0009651-response to salt stress
GO:0009751-response to salicylic acid stimulus
|
|
|
|
|
