Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24237627 7 F Gene expression analysis (transcription) : Quantitative RT-PCR OsDUF1618 (26)-LOC_Os02g02240; OsDUF1618 (35)-LOC_Os03g54200; OsDUF1618 (51)-LOC_Os03g14310; OsDUF1618 (59)-LOC_Os05g18660; OsDUF1618 (112)-LOC_Os12g39970; OsDUF1618 (113)-LOC_Os12g39710. (RAP Ids are given in suppl.) Isogenic/polymorphic line of cultivar T65 is used viz. TISL5. Tissue and treatment details are taken from back ref. Significant difference is considered as 0.01< P <0.05; and P <0.01.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] # # 0.04
grp_1_1_1
 
  1 2 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007332 12h 4°C # 0.01882  
  1 3 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007319 2h 42°C MCE:1000280 24h # 0.04725  
  1 4 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.08195  
  1 5 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 23% 12h # 0.06314  
  1 6 LOC_Os02g02240 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007187 1mM 24h # 0.03763  
 
LOC_Os02g02240-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] # # 0.03333
grp_2_1_1
 
  2 2 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007332 12h 4°C # 0.07263  
  2 3 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007319 2h 42°C MCE:1000280 24h # 0.02772  
  2 4 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.07474  
  2 5 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 23% 12h # 0.04842  
  2 6 LOC_Os03g54200 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007187 1mM 24h # 0.02737  
 
LOC_Os03g54200-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] # # 0.21515
grp_3_1_1
 
  3 2 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007332 12h 4°C # 0.33837  
  3 3 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007319 2h 42°C MCE:1000280 24h # 0.19468  
  3 4 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.53995  
  3 5 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 23% 12h # 0.35846  
  3 6 LOC_Os03g14310 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007187 1mM 24h # 0.24547  
 
LOC_Os03g14310-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] # # 0.73518
grp_4_1_1
 
  4 2 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007332 12h 4°C # 1.25692  
  4 3 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007319 2h 42°C MCE:1000280 24h # 0.65217  
  4 4 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 2.59684  
  4 5 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 23% 12h # 1.70751  
  4 6 LOC_Os05g18660 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007187 1mM 24h # 0.48617  
 
LOC_Os05g18660-OsFBDUF24 - F-box and DUF domain containing protein, expressed
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] # # 0.14353
grp_5_1_1
 
  5 2 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007332 12h 4°C # 0.29871  
  5 3 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007319 2h 42°C MCE:1000280 24h # 0.27026  
  5 4 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.18491  
  5 5 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 23% 12h # 0.11767  
  5 6 LOC_Os12g39970 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007187 1mM 24h # 0.06078  
 
LOC_Os12g39970-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] # # 0.15889
grp_6_1_1
 
  6 2 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007332 12h 4°C # 0.14726  
  6 3 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007319 2h 42°C MCE:1000280 24h # 0.13135  
  6 4 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.24097  
  6 5 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 23% 12h # 0.17355  
  6 6 LOC_Os12g39710 # # 39947 CU:121 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007187 1mM 24h # 0.06429  
 
LOC_Os12g39710-expressed protein
39947-Oryza sativa japonica group
CU:121-cv. Taichung 65
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
EO:0007187-salicylic acid regimen
EO:0007319-warm/hot air temperature regimen
EO:0007332-cold air temperature regimen
MCE:1000016-polyethylene glycol (PEG) treatment
MCE:1000280-recovery treatment from heat stress
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  24237627 7 F Gene expression analysis (transcription) : Quantitative RT-PCR OsDUF1618 (26)-LOC_Os02g02240; OsDUF1618 (35)-LOC_Os03g54200; OsDUF1618 (51)-LOC_Os03g14310; OsDUF1618 (59)-LOC_Os05g18660; OsDUF1618 (112)-LOC_Os12g39970; OsDUF1618 (113)-LOC_Os12g39710. (RAP Ids are given in suppl.)  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os02g02240 GO:0009409 # # # # #            
  2 LOC_Os02g02240 GO:0009651 # # # # #            
  3 LOC_Os03g14310 GO:0009409 # # # # #            
  4 LOC_Os03g14310 GO:0009414 # # # # #            
  5 LOC_Os03g14310 GO:0009651 # # # # #            
  6 LOC_Os03g54200 GO:0009409 # # # # #            
  7 LOC_Os03g54200 GO:0009651 # # # # #            
  8 LOC_Os05g18660 GO:0009409 # # # # #            
  9 LOC_Os05g18660 GO:0009414 # # # # #            
  10 LOC_Os05g18660 GO:0009651 # # # # #            
  11 LOC_Os12g39710 GO:0009651 # # # # #            
  12 LOC_Os12g39710 GO:0009751 # # # # #            
  13 LOC_Os12g39970 GO:0009408 # # # # #            
  14 LOC_Os12g39970 GO:0009409 # # # # #            
  15 LOC_Os12g39970 GO:0009751 # # # # #            
 
LOC_Os02g02240-expressed protein
LOC_Os03g14310-expressed protein
LOC_Os03g54200-expressed protein
LOC_Os05g18660-OsFBDUF24 - F-box and DUF domain containing protein, expressed
LOC_Os12g39710-expressed protein
LOC_Os12g39970-expressed protein
GO:0009408-response to heat
GO:0009409-response to cold
GO:0009414-response to water deprivation
GO:0009651-response to salt stress
GO:0009751-response to salicylic acid stimulus
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India