Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24389954 2.A,B F Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704. Root RNA was extracted from a mixture of late tillering stage tip and middle sections of the root.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os05g12240 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_1_1_1
grp_1_1_2
 
  1 2 LOC_Os05g12240 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 3.3856933
grp_1_2_1
 
  1 3 LOC_Os05g12240 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 5.294277
grp_1_3_1
 
  1 4 LOC_Os05g12240 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 0.67945707
grp_1_4_1
 
  1 5 LOC_Os05g12240 # # 39947 CU:100 # WT # PO:0020104[#] MCP:1000533[#] # # 1
grp_1_5_1
 
  1 6 LOC_Os05g12240 # # 39947 CU:224 # WT # PO:0020104[#] MCP:1000533[#] # # 1.6699743  
  1 7 LOC_Os05g12240 # # 39947 CU:226 # WT # PO:0020104[#] MCP:1000533[#] # # 0.30196258  
  1 8 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0020104[#] MCP:1000533[#] # # 1.2871974  
  1 9 LOC_Os05g12240 # # 39947 CU:100 # WT # PO:0025034[#] MCP:1000533[#] # # 1
grp_1_9_1
 
  1 10 LOC_Os05g12240 # # 39947 CU:224 # WT # PO:0025034[#] MCP:1000533[#] # # 0.04345194  
  1 11 LOC_Os05g12240 # # 39947 CU:226 # WT # PO:0025034[#] MCP:1000533[#] # # 0.10539251  
  1 12 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0025034[#] MCP:1000533[#] # # 0.19701028  
  1 13 LOC_Os05g12240 # # 39947 CU:100 # WT # PO:0020103[#] MCP:1000288[#] # # 1
grp_1_13_1
 
  1 14 LOC_Os05g12240 # # 39947 CU:224 # WT # PO:0020103[#] MCP:1000288[#] # # 0.7405539  
  1 15 LOC_Os05g12240 # # 39947 CU:226 # WT # PO:0020103[#] MCP:1000288[#] # # 0.48967353  
  1 16 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0020103[#] MCP:1000288[#] # # 0.08974688  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000288-7 days post-anthesis stage
MCP:1000533-early tillering stage
MCP:1000534-late tillering stage
PO:0000025-root tip
PO:0020103-flag leaf
PO:0020104-leaf sheath
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g60509 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_2_1_1
grp_2_1_2
 
  2 2 LOC_Os03g60509 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 59.193874
grp_2_2_1
 
  2 3 LOC_Os03g60509 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 15.336542
grp_2_3_1
 
  2 4 LOC_Os03g60509 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 7.1318583
grp_2_4_1
 
  2 5 LOC_Os03g60509 # # 39947 CU:100 # WT # PO:0020104[#] MCP:1000533[#] # # 1
grp_2_5_1
 
  2 6 LOC_Os03g60509 # # 39947 CU:224 # WT # PO:0020104[#] MCP:1000533[#] # # 1.5634295  
  2 7 LOC_Os03g60509 # # 39947 CU:226 # WT # PO:0020104[#] MCP:1000533[#] # # 0.63948065  
  2 8 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0020104[#] MCP:1000533[#] # # 1.0208329  
  2 9 LOC_Os03g60509 # # 39947 CU:100 # WT # PO:0025034[#] MCP:1000533[#] # # 1
grp_2_9_1
 
  2 10 LOC_Os03g60509 # # 39947 CU:224 # WT # PO:0025034[#] MCP:1000533[#] # # 0.493811  
  2 11 LOC_Os03g60509 # # 39947 CU:226 # WT # PO:0025034[#] MCP:1000533[#] # # 1.9949415  
  2 12 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0025034[#] MCP:1000533[#] # # 0.88615716  
  2 13 LOC_Os03g60509 # # 39947 CU:100 # WT # PO:0020103[#] MCP:1000288[#] # # 1
grp_2_13_1
 
  2 14 LOC_Os03g60509 # # 39947 CU:224 # WT # PO:0020103[#] MCP:1000288[#] # # 2.7837565  
  2 15 LOC_Os03g60509 # # 39947 CU:226 # WT # PO:0020103[#] MCP:1000288[#] # # 1.6731398  
  2 16 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0020103[#] MCP:1000288[#] # # 0.56069076  
 
LOC_Os03g60509-expressed protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000288-7 days post-anthesis stage
MCP:1000533-early tillering stage
MCP:1000534-late tillering stage
PO:0000025-root tip
PO:0020103-flag leaf
PO:0020104-leaf sheath
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 CAA69253 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_3_1_1
grp_3_1_2
 
  3 2 CAA69253 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 6.771512
grp_3_2_1
 
  3 3 CAA69253 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 6.2020054
grp_3_3_1
 
  3 4 CAA69253 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1.4181037
grp_3_4_1
 
  3 5 CAA69253 # # 39947 CU:100 # WT # PO:0020104[#] MCP:1000533[#] # # 1
grp_3_5_1
 
  3 6 CAA69253 # # 39947 CU:224 # WT # PO:0020104[#] MCP:1000533[#] # # 6.924096  
  3 7 CAA69253 # # 39947 CU:226 # WT # PO:0020104[#] MCP:1000533[#] # # 0.51511353  
  3 8 CAA69253 # # 39947 CU:225 # WT # PO:0020104[#] MCP:1000533[#] # # 1.4812198  
  3 9 CAA69253 # # 39947 CU:100 # WT # PO:0025034[#] MCP:1000533[#] # # 1
grp_3_9_1
 
  3 10 CAA69253 # # 39947 CU:224 # WT # PO:0025034[#] MCP:1000533[#] # # 0  
  3 11 CAA69253 # # 39947 CU:226 # WT # PO:0025034[#] MCP:1000533[#] # # 0.8101427  
  3 12 CAA69253 # # 39947 CU:225 # WT # PO:0025034[#] MCP:1000533[#] # # 0.13358517  
  3 13 CAA69253 # # 39947 CU:100 # WT # PO:0020103[#] MCP:1000288[#] # # 1
grp_3_13_1
 
  3 14 CAA69253 # # 39947 CU:224 # WT # PO:0020103[#] MCP:1000288[#] # # 1.3715658  
  3 15 CAA69253 # # 39947 CU:226 # WT # PO:0020103[#] MCP:1000288[#] # # 0.5877291  
  3 16 CAA69253 # # 39947 CU:225 # WT # PO:0020103[#] MCP:1000288[#] # # 0.0893308  
 
CAA69253-Dihydroflavonol reductase
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000288-7 days post-anthesis stage
MCP:1000533-early tillering stage
MCP:1000534-late tillering stage
PO:0000025-root tip
PO:0020103-flag leaf
PO:0020104-leaf sheath
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os03g15360 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_4_1_1
grp_4_1_2
 
  4 2 LOC_Os03g15360 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 5.515419
grp_4_2_1
 
  4 3 LOC_Os03g15360 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 2.8409457
grp_4_3_1
 
  4 4 LOC_Os03g15360 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 2.871477
grp_4_4_1
 
  4 5 LOC_Os03g15360 # # 39947 CU:100 # WT # PO:0020104[#] MCP:1000533[#] # # 1
grp_4_5_1
 
  4 6 LOC_Os03g15360 # # 39947 CU:224 # WT # PO:0020104[#] MCP:1000533[#] # # 1.4472426  
  4 7 LOC_Os03g15360 # # 39947 CU:226 # WT # PO:0020104[#] MCP:1000533[#] # # 0.15496801  
  4 8 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0020104[#] MCP:1000533[#] # # 0.6461098  
  4 9 LOC_Os03g15360 # # 39947 CU:100 # WT # PO:0025034[#] MCP:1000533[#] # # 1
grp_4_9_1
 
  4 10 LOC_Os03g15360 # # 39947 CU:224 # WT # PO:0025034[#] MCP:1000533[#] # # 0.06911727  
  4 11 LOC_Os03g15360 # # 39947 CU:226 # WT # PO:0025034[#] MCP:1000533[#] # # 0.11434533  
  4 12 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0025034[#] MCP:1000533[#] # # 0.2488919  
  4 13 LOC_Os03g15360 # # 39947 CU:100 # WT # PO:0020103[#] MCP:1000288[#] # # 1
grp_4_13_1
 
  4 14 LOC_Os03g15360 # # 39947 CU:224 # WT # PO:0020103[#] MCP:1000288[#] # # 0.53374606  
  4 15 LOC_Os03g15360 # # 39947 CU:226 # WT # PO:0020103[#] MCP:1000288[#] # # 0.46015188  
  4 16 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0020103[#] MCP:1000288[#] # # 0.10419883  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000288-7 days post-anthesis stage
MCP:1000533-early tillering stage
MCP:1000534-late tillering stage
PO:0000025-root tip
PO:0020103-flag leaf
PO:0020104-leaf sheath
PO:0025034-leaf
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 CAA69252 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_5_1_1
grp_5_1_2
 
  5 2 CAA69252 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 7.3981867
grp_5_2_1
 
  5 3 CAA69252 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 3.668061
grp_5_3_1
 
  5 4 CAA69252 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 4.094341
grp_5_4_1
 
  5 5 CAA69252 # # 39947 CU:100 # WT # PO:0020104[#] MCP:1000533[#] # # 1
grp_5_5_1
 
  5 6 CAA69252 # # 39947 CU:224 # WT # PO:0020104[#] MCP:1000533[#] # # 5.340696  
  5 7 CAA69252 # # 39947 CU:226 # WT # PO:0020104[#] MCP:1000533[#] # # 0.46516103  
  5 8 CAA69252 # # 39947 CU:225 # WT # PO:0020104[#] MCP:1000533[#] # # 0.5150386  
  5 9 CAA69252 # # 39947 CU:100 # WT # PO:0025034[#] MCP:1000533[#] # # 1
grp_5_9_1
 
  5 10 CAA69252 # # 39947 CU:224 # WT # PO:0025034[#] MCP:1000533[#] # # 0.07606736  
  5 11 CAA69252 # # 39947 CU:226 # WT # PO:0025034[#] MCP:1000533[#] # # 0.27319685  
  5 12 CAA69252 # # 39947 CU:225 # WT # PO:0025034[#] MCP:1000533[#] # # 0.5847704  
  5 13 CAA69252 # # 39947 CU:100 # WT # PO:0020103[#] MCP:1000288[#] # # 1
grp_5_13_1
 
  5 14 CAA69252 # # 39947 CU:224 # WT # PO:0020103[#] MCP:1000288[#] # # 3.6967528  
  5 15 CAA69252 # # 39947 CU:226 # WT # PO:0020103[#] MCP:1000288[#] # # 0.86662316  
  5 16 CAA69252 # # 39947 CU:225 # WT # PO:0020103[#] MCP:1000288[#] # # 0.13102956  
 
CAA69252-anthocyanidin synthase
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000288-7 days post-anthesis stage
MCP:1000533-early tillering stage
MCP:1000534-late tillering stage
PO:0000025-root tip
PO:0020103-flag leaf
PO:0020104-leaf sheath
PO:0025034-leaf
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India