| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
24389954 |
2.i |
T |
Gene expression analysis (transcription) : Quantitative RT-PCR |
GenBank accession Id for CHS(LOC_Os05g12240)-AC136226. There is a discrepancy regarding endosperm dev stage as it is quoted as 7 DAF in material and method and 5 DAF in figure legend. |
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009001[#] MCP:1000489[#] |
# |
# |
 1 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:224 |
# |
WT |
# |
PO:0009001[#] MCP:1000489[#] |
# |
# |
0.27 |
|
| |
1 |
3 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:226 |
# |
WT |
# |
PO:0009001[#] MCP:1000489[#] |
# |
# |
0.21 |
|
| |
1 |
4 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0009001[#] MCP:1000489[#] |
# |
# |
1.85 |
|
|
| |
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
|
WT-Wild Type
|
MCP:1000489-3 days post-anthesis stage
PO:0009001-fruit
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009001[#] MCP:1000204[#] |
# |
# |
1 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:224 |
# |
WT |
# |
PO:0009001[#] MCP:1000204[#] |
# |
# |
4.18 |
|
| |
2 |
3 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:226 |
# |
WT |
# |
PO:0009001[#] MCP:1000204[#] |
# |
# |
8.86 |
|
| |
2 |
4 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0009001[#] MCP:1000204[#] |
# |
# |
78.11 |
|
|
| |
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
|
WT-Wild Type
|
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009001[#] MCP:1000288[#] |
# |
# |
1 grp_3_1_1 |
|
| |
3 |
2 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:224 |
# |
WT |
# |
PO:0009001[#] MCP:1000288[#] |
# |
# |
2.63 |
|
| |
3 |
3 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:226 |
# |
WT |
# |
PO:0009001[#] MCP:1000288[#] |
# |
# |
3.52 |
|
| |
3 |
4 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0009001[#] MCP:1000288[#] |
# |
# |
3.4 |
|
|
| |
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
|
WT-Wild Type
|
MCP:1000288-7 days post-anthesis stage
PO:0009001-fruit
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
4 |
1 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009089[#] MCP:1000288[#] |
# |
# |
1 grp_4_1_1 |
|
| |
4 |
2 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:224 |
# |
WT |
# |
PO:0009089[#] MCP:1000288[#] |
# |
# |
3.72 |
|
| |
4 |
3 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:226 |
# |
WT |
# |
PO:0009089[#] MCP:1000288[#] |
# |
# |
ND |
|
| |
4 |
4 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0009089[#] MCP:1000288[#] |
# |
# |
6.01 |
|
|
| |
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
|
WT-Wild Type
|
MCP:1000288-7 days post-anthesis stage
PO:0009089-endosperm
|
|
| |
|
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