Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24389954 2.i T Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for CHS(LOC_Os05g12240)-AC136226. There is a discrepancy regarding endosperm dev stage as it is quoted as 7 DAF in material and method and 5 DAF in figure legend.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os05g12240 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000489[#] # # 1
grp_1_1_1
 
  1 2 LOC_Os05g12240 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000489[#] # # 0.27  
  1 3 LOC_Os05g12240 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000489[#] # # 0.21  
  1 4 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000489[#] # # 1.85  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000489-3 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os05g12240 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000204[#] # # 1
grp_2_1_1
 
  2 2 LOC_Os05g12240 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000204[#] # # 4.18  
  2 3 LOC_Os05g12240 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000204[#] # # 8.86  
  2 4 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000204[#] # # 78.11  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os05g12240 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000288[#] # # 1
grp_3_1_1
 
  3 2 LOC_Os05g12240 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000288[#] # # 2.63  
  3 3 LOC_Os05g12240 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000288[#] # # 3.52  
  3 4 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000288[#] # # 3.4  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000288-7 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os05g12240 # # 39947 CU:100 # WT # PO:0009089[#] MCP:1000288[#] # # 1
grp_4_1_1
 
  4 2 LOC_Os05g12240 # # 39947 CU:224 # WT # PO:0009089[#] MCP:1000288[#] # # 3.72  
  4 3 LOC_Os05g12240 # # 39947 CU:226 # WT # PO:0009089[#] MCP:1000288[#] # # ND  
  4 4 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0009089[#] MCP:1000288[#] # # 6.01  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000288-7 days post-anthesis stage
PO:0009089-endosperm
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India