Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24389954 2.iv T Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for LAR (LOC_Os03g15360)- BN00070. There is a discrepancy regarding endosperm dev stage as it is quoted as 7 DAF in material and method and 5 DAF in figure legend.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os03g15360 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000489[#] # # 1
grp_1_1_1
 
  1 2 LOC_Os03g15360 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000489[#] # # 0.46  
  1 3 LOC_Os03g15360 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000489[#] # # 1.58  
  1 4 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000489[#] # # 1.78  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000489-3 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g15360 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000204[#] # # 1
grp_2_1_1
 
  2 2 LOC_Os03g15360 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000204[#] # # 79.84  
  2 3 LOC_Os03g15360 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000204[#] # # 51.65  
  2 4 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000204[#] # # 419.23  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os03g15360 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000288[#] # # 1
grp_3_1_1
 
  3 2 LOC_Os03g15360 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000288[#] # # 37.02  
  3 3 LOC_Os03g15360 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000288[#] # # 4.5  
  3 4 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000288[#] # # 28.2  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000288-7 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os03g15360 # # 39947 CU:100 # WT # PO:0009089[#] MCP:1000288[#] # # 1
grp_4_1_1
 
  4 2 LOC_Os03g15360 # # 39947 CU:224 # WT # PO:0009089[#] MCP:1000288[#] # # 1.78  
  4 3 LOC_Os03g15360 # # 39947 CU:226 # WT # PO:0009089[#] MCP:1000288[#] # # ND  
  4 4 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0009089[#] MCP:1000288[#] # # 2.3  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000288-7 days post-anthesis stage
PO:0009089-endosperm
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India