| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
24389954 |
2.iv |
T |
Gene expression analysis (transcription) : Quantitative RT-PCR |
GenBank accession Id for LAR (LOC_Os03g15360)- BN00070. There is a discrepancy regarding endosperm dev stage as it is quoted as 7 DAF in material and method and 5 DAF in figure legend. |
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009001[#] MCP:1000489[#] |
# |
# |
 1 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:224 |
# |
WT |
# |
PO:0009001[#] MCP:1000489[#] |
# |
# |
0.46 |
|
| |
1 |
3 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:226 |
# |
WT |
# |
PO:0009001[#] MCP:1000489[#] |
# |
# |
1.58 |
|
| |
1 |
4 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0009001[#] MCP:1000489[#] |
# |
# |
1.78 |
|
|
| |
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
|
WT-Wild Type
|
MCP:1000489-3 days post-anthesis stage
PO:0009001-fruit
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009001[#] MCP:1000204[#] |
# |
# |
1 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:224 |
# |
WT |
# |
PO:0009001[#] MCP:1000204[#] |
# |
# |
79.84 |
|
| |
2 |
3 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:226 |
# |
WT |
# |
PO:0009001[#] MCP:1000204[#] |
# |
# |
51.65 |
|
| |
2 |
4 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0009001[#] MCP:1000204[#] |
# |
# |
419.23 |
|
|
| |
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
|
WT-Wild Type
|
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009001[#] MCP:1000288[#] |
# |
# |
1 grp_3_1_1 |
|
| |
3 |
2 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:224 |
# |
WT |
# |
PO:0009001[#] MCP:1000288[#] |
# |
# |
37.02 |
|
| |
3 |
3 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:226 |
# |
WT |
# |
PO:0009001[#] MCP:1000288[#] |
# |
# |
4.5 |
|
| |
3 |
4 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0009001[#] MCP:1000288[#] |
# |
# |
28.2 |
|
|
| |
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
|
WT-Wild Type
|
MCP:1000288-7 days post-anthesis stage
PO:0009001-fruit
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
4 |
1 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0009089[#] MCP:1000288[#] |
# |
# |
1 grp_4_1_1 |
|
| |
4 |
2 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:224 |
# |
WT |
# |
PO:0009089[#] MCP:1000288[#] |
# |
# |
1.78 |
|
| |
4 |
3 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:226 |
# |
WT |
# |
PO:0009089[#] MCP:1000288[#] |
# |
# |
ND |
|
| |
4 |
4 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0009089[#] MCP:1000288[#] |
# |
# |
2.3 |
|
|
| |
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
|
WT-Wild Type
|
MCP:1000288-7 days post-anthesis stage
PO:0009089-endosperm
|
|
| |
|
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