Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24389954 3.A F Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704. Root RNA was extracted from a mixture of late tillering stage tip and middle sections of the root.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os05g12240 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_1_1_1
 
  1 2 LOC_Os05g12240 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 3.1377428  
  1 3 LOC_Os05g12240 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 5.5898056  
  1 4 LOC_Os05g12240 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 0.5660194  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000534-late tillering stage
PO:0000025-root tip
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g60509 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_2_1_1
 
  2 2 LOC_Os03g60509 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 59.16602  
  2 3 LOC_Os03g60509 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 15.540049  
  2 4 LOC_Os03g60509 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 7.118204  
 
LOC_Os03g60509-expressed protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000534-late tillering stage
PO:0000025-root tip
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 CAA69253 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_3_1_1
 
  3 2 CAA69253 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 6.7286406  
  3 3 CAA69253 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 6.59818  
  3 4 CAA69253 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1.1663835  
 
CAA69253-Dihydroflavonol reductase
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000534-late tillering stage
PO:0000025-root tip
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os03g15360 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_4_1_1
 
  4 2 LOC_Os03g15360 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 5.9410195  
  4 3 LOC_Os03g15360 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 2.9558253  
  4 4 LOC_Os03g15360 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 3.0968447  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000534-late tillering stage
PO:0000025-root tip
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 CAA69252 # # 39947 CU:100 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 1
grp_5_1_1
 
  5 2 CAA69252 # # 39947 CU:224 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 7.7358007  
  5 3 CAA69252 # # 39947 CU:226 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 3.6635923  
  5 4 CAA69252 # # 39947 CU:225 # WT # MCP:1000160[#] PO:0000025[#] MCP:1000534[#] # # 3.9410195  
 
CAA69252-anthocyanidin synthase
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000160-middle part of root
MCP:1000534-late tillering stage
PO:0000025-root tip
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India