Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24389954 3.B F Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os05g12240 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000204[#] # # 1
grp_1_1_1
 
  1 2 LOC_Os05g12240 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000204[#] # # 31.811224  
  1 3 LOC_Os05g12240 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000204[#] # # 47.97449  
  1 4 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000204[#] # # 94.94898  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g60509 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000204[#] # # 1
grp_2_1_1
 
  2 2 LOC_Os03g60509 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000204[#] # # 57.066326  
  2 3 LOC_Os03g60509 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000204[#] # # 84.84694  
  2 4 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000204[#] # # 72.72449  
 
LOC_Os03g60509-expressed protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 CAA69253 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000204[#] # # 1
grp_3_1_1
 
  3 2 CAA69253 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000204[#] # # 84.341835  
  3 3 CAA69253 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000204[#] # # 9587.944  
  3 4 CAA69253 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000204[#] # # 5552.676  
 
CAA69253-Dihydroflavonol reductase
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os03g15360 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000204[#] # # 1
grp_4_1_1
 
  4 2 LOC_Os03g15360 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000204[#] # # 76.2602  
  4 3 LOC_Os03g15360 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000204[#] # # 4412.333  
  4 4 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000204[#] # # 99.494896  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 CAA69252 # # 39947 CU:100 # WT # PO:0009001[#] MCP:1000204[#] # # 1
grp_5_1_1
 
  5 2 CAA69252 # # 39947 CU:224 # WT # PO:0009001[#] MCP:1000204[#] # # 94.94898  
  5 3 CAA69252 # # 39947 CU:226 # WT # PO:0009001[#] MCP:1000204[#] # # 85.85714  
  5 4 CAA69252 # # 39947 CU:225 # WT # PO:0009001[#] MCP:1000204[#] # # 3060.4841  
 
CAA69252-anthocyanidin synthase
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
CU:224-Akunemochi
CU:225-Chinakuromai
CU:226-Tsukushiakamochi
WT-Wild Type
MCP:1000204-5 days post-anthesis stage
PO:0009001-fruit
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India