Figure Details Page
Regulation details
PubMed Id Figure
 Type Experimental method Comment  
  24389954 4 F Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704. Rice plants were treated with various concentrations of Sucrose, Glucose, or a mixture of Sucrose 0.2 M and Glucose 0.2 M for 30 h.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype		 Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] # 30h # 1
grp_1_1_1
 
  1 2 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h # 1.3175615  
  1 3 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.4M 30h # 2.1533165  
  1 4 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.6M 30h # 2.1112092  
  1 5 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.2M 30h # 0.07257993  
  1 6 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.6M 30h # 0.15788916  
  1 7 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h # 0.08749845  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
  
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype		 Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] # 30h # 1
grp_2_1_1
 
  2 2 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h # 1.872707  
  2 3 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.4M 30h # 2.864215  
  2 4 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.6M 30h # 1.1937995  
  2 5 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.2M 30h # 0.06135131  
  2 6 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.6M 30h # 0.20333327  
  2 7 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h # 0.07623453  
 
LOC_Os03g60509-expressed protein
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
  
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype		 Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] # 30h # 1
grp_3_1_1
 
  3 2 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h # 7.383715  
  3 3 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.4M 30h # 5.7981496  
  3 4 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.6M 30h # 2.881658  
  3 5 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.2M 30h # 0.07844141  
  3 6 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.6M 30h # 0.19208701  
  3 7 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h # 0.07918292  
 
CAA69253-Dihydroflavonol reductase
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
  
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype		 Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] # 30h # 1
grp_4_1_1
 
  4 2 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h # 2.5015624  
  4 3 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.4M 30h # 3.705496  
  4 4 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.6M 30h # 1.5394149  
  4 5 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.2M 30h # 0.09551385  
  4 6 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.6M 30h # 0.3932134  
  4 7 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h # 0.08207835  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
  
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype		 Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] # 30h # 1
grp_5_1_1
 
  5 2 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h # 3.524002  
  5 3 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.4M 30h # 3.4393814  
  5 4 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.6M 30h # 2.037976  
  5 5 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.2M 30h # 0.09844459  
  5 6 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000241 0.6M 30h # 0.38198477  
  5 7 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h # 0.09916845  
 
CAA69252-anthocyanidin synthase
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
  
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  24389954 4 F Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704. Glucose and a mixture of sucrose and glucose were found to negatively regulate the expression of these genes.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 CAA69252 GO:0009744 # # # # #            
  2 CAA69252 GO:0009749 # # # # #            
  3 CAA69253 GO:0009744 # # # # #            
  4 CAA69253 GO:0009749 # # # # #            
  5 LOC_Os03g15360 GO:0009744 # # # # #            
  6 LOC_Os03g15360 GO:0009749 # # # # #            
  7 LOC_Os03g60509 GO:0009744 # # # # #            
  8 LOC_Os03g60509 GO:0009749 # # # # #            
  9 LOC_Os05g12240 GO:0009744 # # # # #            
  10 LOC_Os05g12240 GO:0009749 # # # # #            
 
CAA69252-anthocyanidin synthase
CAA69253-Dihydroflavonol reductase
LOC_Os03g15360-nmrA-like family domain containing protein
LOC_Os03g60509-expressed protein
LOC_Os05g12240-chalcone synthase, putative
GO:0009744-response to sucrose stimulus
GO:0009749-response to glucose stimulus
  

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India