Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
|
24389954 |
4 |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704. Rice plants were treated with various concentrations of Sucrose, Glucose, or a mixture of Sucrose 0.2 M and Glucose 0.2 M for 30 h. |
|
|
|
|
|
|
|
|
|
|
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
|
1 |
1 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
# 30h |
# |
1 grp_1_1_1 |
|
|
1 |
2 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h |
# |
1.3175615 |
|
|
1 |
3 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.4M 30h |
# |
2.1533165 |
|
|
1 |
4 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.6M 30h |
# |
2.1112092 |
|
|
1 |
5 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.2M 30h |
# |
0.07257993 |
|
|
1 |
6 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.6M 30h |
# |
0.15788916 |
|
|
1 |
7 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h |
# |
0.08749845 |
|
|
|
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
|
|
|
|
|
|
|
|
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
|
2 |
1 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
# 30h |
# |
1 grp_2_1_1 |
|
|
2 |
2 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h |
# |
1.872707 |
|
|
2 |
3 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.4M 30h |
# |
2.864215 |
|
|
2 |
4 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.6M 30h |
# |
1.1937995 |
|
|
2 |
5 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.2M 30h |
# |
0.06135131 |
|
|
2 |
6 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.6M 30h |
# |
0.20333327 |
|
|
2 |
7 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h |
# |
0.07623453 |
|
|
|
LOC_Os03g60509-expressed protein
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
|
|
|
|
|
|
|
|
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
|
3 |
1 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
# 30h |
# |
1 grp_3_1_1 |
|
|
3 |
2 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h |
# |
7.383715 |
|
|
3 |
3 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.4M 30h |
# |
5.7981496 |
|
|
3 |
4 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.6M 30h |
# |
2.881658 |
|
|
3 |
5 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.2M 30h |
# |
0.07844141 |
|
|
3 |
6 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.6M 30h |
# |
0.19208701 |
|
|
3 |
7 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h |
# |
0.07918292 |
|
|
|
CAA69253-Dihydroflavonol reductase
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
|
|
|
|
|
|
|
|
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
|
4 |
1 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
# 30h |
# |
1 grp_4_1_1 |
|
|
4 |
2 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h |
# |
2.5015624 |
|
|
4 |
3 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.4M 30h |
# |
3.705496 |
|
|
4 |
4 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.6M 30h |
# |
1.5394149 |
|
|
4 |
5 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.2M 30h |
# |
0.09551385 |
|
|
4 |
6 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.6M 30h |
# |
0.3932134 |
|
|
4 |
7 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h |
# |
0.08207835 |
|
|
|
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
|
|
|
|
|
|
|
|
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
|
5 |
1 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
# 30h |
# |
1 grp_5_1_1 |
|
|
5 |
2 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h |
# |
3.524002 |
|
|
5 |
3 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.4M 30h |
# |
3.4393814 |
|
|
5 |
4 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.6M 30h |
# |
2.037976 |
|
|
5 |
5 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.2M 30h |
# |
0.09844459 |
|
|
5 |
6 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000241 0.6M 30h |
# |
0.38198477 |
|
|
5 |
7 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
MCE:1000037 0.2M 30h MCE:1000241 0.2M 30h |
# |
0.09916845 |
|
|
|
CAA69252-anthocyanidin synthase
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
MCE:1000037-sucrose
MCE:1000241-D-glucose
|
|
|
|
|
|
|
|
Functional details |
|
PubMed Id |
Figure
|
Type |
Experimental Method |
Comment |
|
|
24389954 |
4 |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704. Glucose and a mixture of sucrose and glucose were found to negatively regulate the expression of these genes. |
|
|
|
S. No. |
Locus Id 1 |
GO Id |
Dep. loc |
Dep. type |
From |
To |
Motif |
|
|
|
1 |
CAA69252 |
GO:0009744 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
2 |
CAA69252 |
GO:0009749 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
3 |
CAA69253 |
GO:0009744 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
4 |
CAA69253 |
GO:0009749 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
5 |
LOC_Os03g15360 |
GO:0009744 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
6 |
LOC_Os03g15360 |
GO:0009749 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
7 |
LOC_Os03g60509 |
GO:0009744 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
8 |
LOC_Os03g60509 |
GO:0009749 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
9 |
LOC_Os05g12240 |
GO:0009744 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
10 |
LOC_Os05g12240 |
GO:0009749 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
|
CAA69252-anthocyanidin synthase
CAA69253-Dihydroflavonol reductase
LOC_Os03g15360-nmrA-like family domain containing protein
LOC_Os03g60509-expressed protein
LOC_Os05g12240-chalcone synthase, putative
|
GO:0009744-response to sucrose stimulus
GO:0009749-response to glucose stimulus
|
|
|
|
|