| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
24389954 |
5 |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704. |
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 12h |
# |
 1 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 16h |
# |
7.2371135 |
|
| |
1 |
3 |
LOC_Os05g12240 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 24h |
# |
5.6829896 |
|
|
| |
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 12h |
# |
1 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 16h |
# |
2.969072 |
|
| |
2 |
3 |
LOC_Os03g60509 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 24h |
# |
6.75 |
|
|
| |
LOC_Os03g60509-expressed protein
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 12h |
# |
1 grp_3_1_1 |
|
| |
3 |
2 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 16h |
# |
7.7010307 |
|
| |
3 |
3 |
CAA69253 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 24h |
# |
9.139175 |
|
|
| |
CAA69253-Dihydroflavonol reductase
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
4 |
1 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 12h |
# |
1 grp_4_1_1 |
|
| |
4 |
2 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 16h |
# |
3.4329896 |
|
| |
4 |
3 |
LOC_Os03g15360 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 24h |
# |
3.7113402 |
|
|
| |
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
5 |
1 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 12h |
# |
1 grp_5_1_1 |
|
| |
5 |
2 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 16h |
# |
1.298969 |
|
| |
5 |
3 |
CAA69252 |
# |
# |
39947 |
CU:225 |
# |
WT |
# |
PO:0000003[#] MCP:1000518[30d] |
EO:0007196 24h |
# |
3.8505154 |
|
|
| |
CAA69252-anthocyanidin synthase
39947-Oryza sativa japonica group
CU:225-Chinakuromai
|
WT-Wild Type
d-Days
h-Hours
|
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
|
|
| |
|
|
|
|
|
|
| Functional details |
|
PubMed Id |
Figure
|
Type |
Experimental Method |
Comment |
|
| |
24389954 |
5 |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704. |
|
|
| |
S. No. |
Locus Id 1 |
GO Id |
Dep. loc |
Dep. type |
From |
To |
Motif |
|
|
| |
1 |
CAA69252 |
GO:0009416 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
2 |
CAA69253 |
GO:0009416 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
3 |
LOC_Os03g15360 |
GO:0009416 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
4 |
LOC_Os03g60509 |
GO:0009416 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
5 |
LOC_Os05g12240 |
GO:0009416 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
| |
CAA69252-anthocyanidin synthase
CAA69253-Dihydroflavonol reductase
LOC_Os03g15360-nmrA-like family domain containing protein
LOC_Os03g60509-expressed protein
LOC_Os05g12240-chalcone synthase, putative
|
GO:0009416-response to light stimulus
|
|
|
|
|
