Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24389954 5 F Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 12h # 1
grp_1_1_1
 
  1 2 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 16h # 7.2371135  
  1 3 LOC_Os05g12240 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 24h # 5.6829896  
 
LOC_Os05g12240-chalcone synthase, putative
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 12h # 1
grp_2_1_1
 
  2 2 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 16h # 2.969072  
  2 3 LOC_Os03g60509 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 24h # 6.75  
 
LOC_Os03g60509-expressed protein
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 12h # 1
grp_3_1_1
 
  3 2 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 16h # 7.7010307  
  3 3 CAA69253 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 24h # 9.139175  
 
CAA69253-Dihydroflavonol reductase
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 12h # 1
grp_4_1_1
 
  4 2 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 16h # 3.4329896  
  4 3 LOC_Os03g15360 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 24h # 3.7113402  
 
LOC_Os03g15360-nmrA-like family domain containing protein
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 12h # 1
grp_5_1_1
 
  5 2 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 16h # 1.298969  
  5 3 CAA69252 # # 39947 CU:225 # WT # PO:0000003[#] MCP:1000518[30d] EO:0007196 24h # 3.8505154  
 
CAA69252-anthocyanidin synthase
39947-Oryza sativa japonica group
CU:225-Chinakuromai
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0000003-whole plant
EO:0007196-light regimen
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  24389954 5 F Gene expression analysis (transcription) : Quantitative RT-PCR GenBank accession Id for CHS (LOC_Os05g12240)-AC136226; CHI (LOC_Os03g60509)-XM_470129; DFR (CAA69253)-Y07956; ANS (CAA69252, closest RGAP Id-LOC_Os01g27490)-Y07955; LAR (LOC_Os03g15360)- BN000704.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 CAA69252 GO:0009416 # # # # #            
  2 CAA69253 GO:0009416 # # # # #            
  3 LOC_Os03g15360 GO:0009416 # # # # #            
  4 LOC_Os03g60509 GO:0009416 # # # # #            
  5 LOC_Os05g12240 GO:0009416 # # # # #            
 
CAA69252-anthocyanidin synthase
CAA69253-Dihydroflavonol reductase
LOC_Os03g15360-nmrA-like family domain containing protein
LOC_Os03g60509-expressed protein
LOC_Os05g12240-chalcone synthase, putative
GO:0009416-response to light stimulus
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India