Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24459431 4.D F Gene expression analysis (transcription) : Quantitative RT-PCR RAP id(Os03g0745000)-LOC_Os03g53340;RAP id (Os11g0453900)-LOC_Os11g26750;RAP id (Os06g0195800)-LOC_Os06g09560; OsHsfB2c RAP id(Os09g0526600)-LOC_Os09g35790; AWPM-19 RAP id(Os05g0381400)-LOC_Os05g31670; Hsp90 RAP id(Os04g0107900)-LOC_Os04g01740. Rice cultivar was not mentioned for this experiment, in the article.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os03g53340 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] # # 1
grp_1_1_1
 
  1 2 LOC_Os03g53340 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 30m 4°C # 1.4583311  
  1 3 LOC_Os03g53340 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 1h 4°C # 1.8098578  
  1 4 LOC_Os03g53340 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 2h 4°C # 1.6026981  
  1 5 LOC_Os03g53340 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 4h 4°C # 1.2507634  
  1 6 LOC_Os03g53340 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 8h 4°C # 1.8194789  
  1 7 LOC_Os03g53340 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 12h 4°C # 1.4364965  
 
LOC_Os03g53340-
39947-Oryza sativa japonica group
WT-Wild Type
w-Weeks
h-Hours
m-Minutes
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007174-cold temperature regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os11g26750 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] # # 1
grp_2_1_1
 
  2 2 LOC_Os11g26750 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 30m 4°C # 1.0324823  
  2 3 LOC_Os11g26750 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 1h 4°C # 1.0839826  
  2 4 LOC_Os11g26750 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 2h 4°C # 1.1044353  
  2 5 LOC_Os11g26750 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 4h 4°C # 1.549026  
  2 6 LOC_Os11g26750 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 8h 4°C # 1.9625955  
  2 7 LOC_Os11g26750 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 12h 4°C # 1.2795999  
 
LOC_Os11g26750-
39947-Oryza sativa japonica group
WT-Wild Type
w-Weeks
h-Hours
m-Minutes
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007174-cold temperature regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os06g09560 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] # # 1
grp_3_1_1
 
  3 2 LOC_Os06g09560 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 30m 4°C # 1.0307581  
  3 3 LOC_Os06g09560 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 1h 4°C # 1.0615556  
  3 4 LOC_Os06g09560 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 2h 4°C # 1.2371808  
  3 5 LOC_Os06g09560 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 4h 4°C # 1.236944  
  3 6 LOC_Os06g09560 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 8h 4°C # 1.6918926  
  3 7 LOC_Os06g09560 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 12h 4°C # 1.0399579  
 
LOC_Os06g09560-
39947-Oryza sativa japonica group
WT-Wild Type
w-Weeks
h-Hours
m-Minutes
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007174-cold temperature regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os09g35790 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] # # 1
grp_4_1_1
 
  4 2 LOC_Os09g35790 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 30m 4°C # 1.0807581  
  4 3 LOC_Os09g35790 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 1h 4°C # 1.2977889  
  4 4 LOC_Os09g35790 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 2h 4°C # 2.1147802  
  4 5 LOC_Os09g35790 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 4h 4°C # 2.1869702  
  4 6 LOC_Os09g35790 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 8h 4°C # 1.6901948  
  4 7 LOC_Os09g35790 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 12h 4°C # 1.4313372  
 
LOC_Os09g35790-
39947-Oryza sativa japonica group
WT-Wild Type
w-Weeks
h-Hours
m-Minutes
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007174-cold temperature regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os05g31670 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] # # 1
grp_5_1_1
 
  5 2 LOC_Os05g31670 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 30m 4°C # 1.1514478  
  5 3 LOC_Os05g31670 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 1h 4°C # 1.8753619  
  5 4 LOC_Os05g31670 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 2h 4°C # 1.5958147  
  5 5 LOC_Os05g31670 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 4h 4°C # 1.3886944  
  5 6 LOC_Os05g31670 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 8h 4°C # 1.3988155  
  5 7 LOC_Os05g31670 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 12h 4°C # 1.4503027  
 
LOC_Os05g31670-
39947-Oryza sativa japonica group
WT-Wild Type
w-Weeks
h-Hours
m-Minutes
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007174-cold temperature regimen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os04g01740 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] # # 1
grp_6_1_1
 
  6 2 LOC_Os04g01740 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 30m 4°C # 1.3255725  
  6 3 LOC_Os04g01740 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 1h 4°C # 1.3977625  
  6 4 LOC_Os04g01740 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 2h 4°C # 1.3561463  
  6 5 LOC_Os04g01740 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 4h 4°C # 1.1386681  
  6 6 LOC_Os04g01740 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 8h 4°C # 1.1384575  
  6 7 LOC_Os04g01740 # # 39947 # # WT # PO:0008037[#] MCP:1000518[3w] EO:0007174 12h 4°C # 1.169255  
 
LOC_Os04g01740-
39947-Oryza sativa japonica group
WT-Wild Type
w-Weeks
h-Hours
m-Minutes
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007174-cold temperature regimen
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  24459431 4.D F Gene expression analysis (transcription) : Quantitative RT-PCR RAP id(Os03g0745000)-LOC_Os03g53340;RAP id (Os11g0453900)-LOC_Os11g26750;RAP id (Os06g0195800)-LOC_Os06g09560; OsHsfB2c RAP id(Os09g0526600)-LOC_Os09g35790; AWPM-19 RAP id(Os05g0381400)-LOC_Os05g31670; Hsp90 RAP id(Os04g0107900)-LOC_Os04g01740.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os03g53340 GO:0009409 # # # # #            
  2 LOC_Os04g01740 GO:0009409 # # # # #            
  3 LOC_Os05g31670 GO:0009409 # # # # #            
  4 LOC_Os06g09560 GO:0009409 # # # # #            
  5 LOC_Os09g35790 GO:0009409 # # # # #            
  6 LOC_Os11g26750 GO:0009409 # # # # #            
 
LOC_Os03g53340-
LOC_Os04g01740-
LOC_Os05g31670-
LOC_Os06g09560-
LOC_Os09g35790-
LOC_Os11g26750-
GO:0009409-response to cold
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India