Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24798203 7.A F Gene expression analysis (transcription) : Quantitative RT-PCR OsABCB14 - LOC_Os04g38570(given in article); OsIRT1-LOC_Os03g46470, OsIRT2-LOC_Os03g46454, OsIRO2-LOC_Os01g72370, OsYSL15-LOC_Os02g43410, OsNAAT1-LOC_Os02g20360, OsNRAMP2-LOC_Os12g39180, OsNAS1-LOC_Os03g19427, OsNAS2-LOC_Os03g19420 (obtained by primer BLAST in RGAP).  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os03g46470 # # 39947 CU:100 # WT # PO:0009006[#] # # 1.0070828
grp_1_1_1
 
  1 2 LOC_Os03g46470 LOC_Os04g38570 # 39947 CU:100 # TOS 1 PO:0009006[#] # # 2.4676824  
  1 3 LOC_Os03g46470 LOC_Os04g38570 # 39947 CU:100 # TOS 2 PO:0009006[#] # # 2.1902707  
 
LOC_Os03g46470-metal cation transporter, putative, expressed
LOC_Os04g38570-multidrug resistance protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
TOS-TOS17 mutant
WT-Wild Type
PO:0009006-shoot system
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g46454 # # 39947 CU:100 # WT # PO:0009006[#] # # 1.0307236
grp_2_1_1
 
  2 2 LOC_Os03g46454 LOC_Os04g38570 # 39947 CU:100 # TOS 1 PO:0009006[#] # # 1.5845287  
  2 3 LOC_Os03g46454 LOC_Os04g38570 # 39947 CU:100 # TOS 2 PO:0009006[#] # # 1.5211613  
 
LOC_Os03g46454-metal cation transporter, putative, expressed
LOC_Os04g38570-multidrug resistance protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
TOS-TOS17 mutant
WT-Wild Type
PO:0009006-shoot system
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os01g72370 # # 39947 CU:100 # WT # PO:0009006[#] # # 0.9914021
grp_3_1_1
 
  3 2 LOC_Os01g72370 LOC_Os04g38570 # 39947 CU:100 # TOS 1 PO:0009006[#] # # 1.6333169  
  3 3 LOC_Os01g72370 LOC_Os04g38570 # 39947 CU:100 # TOS 2 PO:0009006[#] # # 1.0158117  
 
LOC_Os01g72370-helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g38570-multidrug resistance protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
TOS-TOS17 mutant
WT-Wild Type
PO:0009006-shoot system
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os02g43410 # # 39947 CU:100 # WT # PO:0009006[#] # # 1.0023651
grp_4_1_1
 
  4 2 LOC_Os02g43410 LOC_Os04g38570 # 39947 CU:100 # TOS 1 PO:0009006[#] # # 1.102799  
  4 3 LOC_Os02g43410 LOC_Os04g38570 # 39947 CU:100 # TOS 2 PO:0009006[#] # # 1.2157444  
 
LOC_Os02g43410-transposon protein, putative, unclassified, expressed
LOC_Os04g38570-multidrug resistance protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
TOS-TOS17 mutant
WT-Wild Type
PO:0009006-shoot system
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os02g20360 # # 39947 CU:100 # WT # PO:0009006[#] # # 0.98813915
grp_5_1_1
 
  5 2 LOC_Os02g20360 LOC_Os04g38570 # 39947 CU:100 # TOS 1 PO:0009006[#] # # 3.9853418  
  5 3 LOC_Os02g20360 LOC_Os04g38570 # 39947 CU:100 # TOS 2 PO:0009006[#] # # 1.25199  
 
LOC_Os02g20360-tyrosine aminotransferase, putative, expressed
LOC_Os04g38570-multidrug resistance protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
TOS-TOS17 mutant
WT-Wild Type
PO:0009006-shoot system
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os12g39180 # # 39947 CU:100 # WT # PO:0009006[#] # # 0.9613602
grp_6_1_1
 
  6 2 LOC_Os12g39180 LOC_Os04g38570 # 39947 CU:100 # TOS 1 PO:0009006[#] # # 3.3665688  
  6 3 LOC_Os12g39180 LOC_Os04g38570 # 39947 CU:100 # TOS 2 PO:0009006[#] # # 2.3209438  
 
LOC_Os04g38570-multidrug resistance protein, putative, expressed
LOC_Os12g39180-natural resistance-associated macrophage protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
TOS-TOS17 mutant
WT-Wild Type
PO:0009006-shoot system
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  7 1 LOC_Os03g19427 # # 39947 CU:100 # WT # PO:0009006[#] # # 1.1361142
grp_7_1_1
 
  7 2 LOC_Os03g19427 LOC_Os04g38570 # 39947 CU:100 # TOS 1 PO:0009006[#] # # 1.4632286  
  7 3 LOC_Os03g19427 LOC_Os04g38570 # 39947 CU:100 # TOS 2 PO:0009006[#] # # 1.3747449  
 
LOC_Os03g19427-nicotianamine synthase, putative, expressed
LOC_Os04g38570-multidrug resistance protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
TOS-TOS17 mutant
WT-Wild Type
PO:0009006-shoot system
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  8 1 LOC_Os03g19420 # # 39947 CU:100 # WT # PO:0009006[#] # # 0.9834422
grp_8_1_1
 
  8 2 LOC_Os03g19420 LOC_Os04g38570 # 39947 CU:100 # TOS 1 PO:0009006[#] # # 1.4616594  
  8 3 LOC_Os03g19420 LOC_Os04g38570 # 39947 CU:100 # TOS 2 PO:0009006[#] # # 1.3731238  
 
LOC_Os03g19420-nicotianamine synthase, putative, expressed
LOC_Os04g38570-multidrug resistance protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
TOS-TOS17 mutant
WT-Wild Type
PO:0009006-shoot system
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India