Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24805883 5.A F Gene expression analysis (transcription) : Northern Analysis OsCAF1A-LOC_Os08g34170, OsCAF1B-LOC_Os04g58810, OsCAF1G-LOC_Os09g24990, OsCAF1H-LOC_Os02g55300. Column 3, 13 are representing drought with 10% water loss and column 4,14 with 30 % water loss.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] # # 1  
  1 2 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007105 20然 12h # 4  
  1 3 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007404 # 1  
  1 4 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007404 # 1  
  1 5 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007174 1d 4°C # 2  
  1 6 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007174 2d 4°C # 3  
  1 7 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007048 200mM 1d # 2  
  1 8 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007048 200mM 2d # 3  
  1 9 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007173 1h 45°C # 2  
  1 10 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007173 3h 45°C # 3  
  1 11 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] # # 1  
  1 12 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007105 20然 12h # 4  
  1 13 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007404 # 1  
  1 14 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007404 # 1  
  1 15 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007174 1d 4°C # 2  
  1 16 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007174 2d 4°C # 2  
  1 17 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007048 200mM 1d # 3  
  1 18 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007048 200mM 2d # 3  
  1 19 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007173 1h 45°C # 3  
  1 20 LOC_Os08g34170 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007173 3h 45°C # 4  
 
LOC_Os08g34170-CAF1 family ribonuclease containing protein, putative, expressed
39947-Oryza sativa japonica group
CU:122-cv. Tainung 67, cv. TNG67, cv. Tainong 67
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009005-root
PO:0009006-shoot system
EO:0007048-sodium chloride regimen
EO:0007105-abscisic acid regimen
EO:0007173-warm/hot temperature regimen
EO:0007174-cold temperature regimen
EO:0007404-drought environment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] # # 0  
  2 2 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007105 20然 12h # 0  
  2 3 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007404 # 2  
  2 4 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007404 # 1  
  2 5 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007174 1d 4°C # 1  
  2 6 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007174 2d 4°C # 2  
  2 7 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007048 200mM 1d # 0  
  2 8 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007048 200mM 2d # 0  
  2 9 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007173 1h 45°C # 0  
  2 10 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007173 3h 45°C # 0  
  2 11 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] # # 0  
  2 12 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007105 20然 12h # 0  
  2 13 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007404 # 3  
  2 14 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007404 # 3  
  2 15 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007174 1d 4°C # 2  
  2 16 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007174 2d 4°C # 2  
  2 17 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007048 200mM 1d # 0  
  2 18 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007048 200mM 2d # 0  
  2 19 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007173 1h 45°C # 0  
  2 20 LOC_Os04g58810 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007173 3h 45°C # 0  
 
LOC_Os04g58810-CAF1 family ribonuclease containing protein, putative, expressed
39947-Oryza sativa japonica group
CU:122-cv. Tainung 67, cv. TNG67, cv. Tainong 67
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009005-root
PO:0009006-shoot system
EO:0007048-sodium chloride regimen
EO:0007105-abscisic acid regimen
EO:0007173-warm/hot temperature regimen
EO:0007174-cold temperature regimen
EO:0007404-drought environment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] # # 0  
  3 2 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007105 20然 12h # 1  
  3 3 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007404 # 1  
  3 4 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007404 # 1  
  3 5 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007174 1d 4°C # 0  
  3 6 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007174 2d 4°C # 0  
  3 7 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007048 200mM 1d # 1  
  3 8 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007048 200mM 2d # 1  
  3 9 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007173 1h 45°C # 1  
  3 10 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007173 3h 45°C # 1  
  3 11 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] # # 4  
  3 12 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007105 20然 12h # 3  
  3 13 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007404 # 4  
  3 14 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007404 # 3  
  3 15 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007174 1d 4°C # 4  
  3 16 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007174 2d 4°C # 3  
  3 17 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007048 200mM 1d # 4  
  3 18 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007048 200mM 2d # 3  
  3 19 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007173 1h 45°C # 2  
  3 20 LOC_Os09g24990 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007173 3h 45°C # 2  
 
LOC_Os09g24990-CAF1 family ribonuclease containing protein, putative, expressed
39947-Oryza sativa japonica group
CU:122-cv. Tainung 67, cv. TNG67, cv. Tainong 67
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009005-root
PO:0009006-shoot system
EO:0007048-sodium chloride regimen
EO:0007105-abscisic acid regimen
EO:0007173-warm/hot temperature regimen
EO:0007174-cold temperature regimen
EO:0007404-drought environment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] # # 0  
  4 2 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007105 20然 12h # 0  
  4 3 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007404 # 0  
  4 4 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007404 # 0  
  4 5 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007174 1d 4°C # 0  
  4 6 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007174 2d 4°C # 0  
  4 7 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007048 200mM 1d # 0  
  4 8 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007048 200mM 2d # 0  
  4 9 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007173 1h 45°C # 3  
  4 10 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009005[#] MCP:1000518[2w] EO:0007173 3h 45°C # 1  
  4 11 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] # # 0  
  4 12 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007105 20然 12h # 0  
  4 13 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007404 # 0  
  4 14 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007404 # 0  
  4 15 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007174 1d 4°C # 0  
  4 16 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007174 2d 4°C # 0  
  4 17 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007048 200mM 1d # 0  
  4 18 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007048 200mM 2d # 0  
  4 19 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007173 1h 45°C # 4  
  4 20 LOC_Os02g55300 # # 39947 CU:122 # WT # PO:0009006[#] MCP:1000518[2w] EO:0007173 3h 45°C # 2  
 
LOC_Os02g55300-CAF1 family ribonuclease containing protein, putative, expressed
39947-Oryza sativa japonica group
CU:122-cv. Tainung 67, cv. TNG67, cv. Tainong 67
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
h-Hours
MCP:1000518-seedling development stage
PO:0009005-root
PO:0009006-shoot system
EO:0007048-sodium chloride regimen
EO:0007105-abscisic acid regimen
EO:0007173-warm/hot temperature regimen
EO:0007174-cold temperature regimen
EO:0007404-drought environment
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  24805883 5.A F Gene expression analysis (transcription) : Northern Analysis OsCAF1A-LOC_Os08g34170, OsCAF1B-LOC_Os04g58810, OsCAF1G-LOC_Os09g24990, OsCAF1H-LOC_Os02g55300.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os02g55300 GO:0009408 # # # # #            
  2 LOC_Os04g58810 GO:0009409 # # # # #            
  3 LOC_Os04g58810 GO:0009414 # # # # #            
  4 LOC_Os04g58810 GO:0009737 # # # # #            
  5 LOC_Os08g34170 GO:0009408 # # # # #            
  6 LOC_Os08g34170 GO:0009409 # # # # #            
  7 LOC_Os08g34170 GO:0009651 # # # # #            
  8 LOC_Os08g34170 GO:0009737 # # # # #            
  9 LOC_Os09g24990 GO:0009408 # # # # #            
  10 LOC_Os09g24990 GO:0009414 # # # # #            
  11 LOC_Os09g24990 GO:0009651 # # # # #            
  12 LOC_Os09g24990 GO:0009737 # # # # #            
 
LOC_Os02g55300-CAF1 family ribonuclease containing protein, putative, expressed
LOC_Os04g58810-CAF1 family ribonuclease containing protein, putative, expressed
LOC_Os08g34170-CAF1 family ribonuclease containing protein, putative, expressed
LOC_Os09g24990-CAF1 family ribonuclease containing protein, putative, expressed
GO:0009408-response to heat
GO:0009409-response to cold
GO:0009414-response to water deprivation
GO:0009651-response to salt stress
GO:0009737-response to abscisic acid stimulus
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India