Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24913626 3 F Gene expression analysis (transcription) : Semi-quantitative RT-PCR plants were either continued in aerated solution or transplanted into N2-flushed or stagnant deoxygenated solution for 9 h.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  1 2 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 0  
  1 3 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 0  
  1 4 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os01g53260-OsWRKY23 - Superfamily of TFs having WRKY and zinc finger domains, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g12030 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 3  
  2 2 LOC_Os03g12030 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 2  
  2 3 LOC_Os03g12030 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  2 4 LOC_Os03g12030 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os03g12030-3-ketoacyl-CoA synthase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os10g07010 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 4  
  3 2 LOC_Os10g07010 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 3  
  3 3 LOC_Os10g07010 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  3 4 LOC_Os10g07010 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 2  
 
LOC_Os10g07010-3-ketoacyl-CoA synthase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  4 2 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 0  
  4 3 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 0  
  4 4 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os04g47250-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  5 2 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 0  
  5 3 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 0  
  5 4 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os05g38350-glycerol-3-phosphate acyltransferase 8, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os05g20100 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 3  
  6 2 LOC_Os05g20100 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 1  
  6 3 LOC_Os05g20100 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 0  
  6 4 LOC_Os05g20100 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 2  
 
LOC_Os05g20100-glycerol-3-phosphate acyltransferase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  7 1 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 3  
  7 2 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 1  
  7 3 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  7 4 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 2  
 
LOC_Os03g17350-white-brown complex homolog protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  8 1 LOC_Os01g61940 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  8 2 LOC_Os01g61940 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 0  
  8 3 LOC_Os01g61940 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 0  
  8 4 LOC_Os01g61940 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 0  
 
LOC_Os01g61940-white-brown complex homolog protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  9 1 LOC_Os07g07790 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  9 2 LOC_Os07g07790 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 1  
  9 3 LOC_Os07g07790 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  9 4 LOC_Os07g07790 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os07g07790-LTPL75 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  10 1 LOC_Os01g21560 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  10 2 LOC_Os01g21560 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 0  
  10 3 LOC_Os01g21560 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 0  
  10 4 LOC_Os01g21560 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os01g21560-esterase/lipase/thioesterase family protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  11 1 LOC_Os06g16350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  11 2 LOC_Os06g16350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 1  
  11 3 LOC_Os06g16350 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  11 4 LOC_Os06g16350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os06g16350-peroxidase precursor, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  12 1 LOC_Os08g27840 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  12 2 LOC_Os08g27840 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 3  
  12 3 LOC_Os08g27840 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  12 4 LOC_Os08g27840 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 2  
 
LOC_Os08g27840-phosphoenolpyruvate carboxylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  13 1 LOC_Os08g33200 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  13 2 LOC_Os08g33200 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 2  
  13 3 LOC_Os08g33200 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  13 4 LOC_Os08g33200 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os08g33200-1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  14 1 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  14 2 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 1  
  14 3 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000560[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  14 4 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h MCE:1000330 9h # 1  
 
LOC_Os06g51220-HMG1/2, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
MCP:1000560-short adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
MCE:1000330-nitrogen flushing
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India