Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24913626 4 F Gene expression analysis (transcription) : Semi-quantitative RT-PCR Long adventitious roots in aerated nutrient solution or in deoxygenated stagnant 0.1% agar nutrient solution for 9 h.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 1  
  1 2 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] EO:0007024 9h # 0  
  1 3 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] EO:0007024 9h # 0  
  1 4 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  1 5 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] MCE:1000195 9h # 0  
  1 6 LOC_Os01g53260 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] MCE:1000195 9h # 0  
 
LOC_Os01g53260-OsWRKY23 - Superfamily of TFs having WRKY and zinc finger domains, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000422-cortical parenchyma cell
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
PO:0020124-root stele
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 0  
  2 2 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] EO:0007024 9h # 0  
  2 3 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] EO:0007024 9h # 1  
  2 4 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  2 5 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  2 6 LOC_Os04g47250 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] MCE:1000195 9h # 3  
 
LOC_Os04g47250-cytochrome P450, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000422-cortical parenchyma cell
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
PO:0020124-root stele
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 0  
  3 2 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] EO:0007024 9h # 1  
  3 3 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] EO:0007024 9h # 0  
  3 4 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  3 5 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  3 6 LOC_Os05g38350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] MCE:1000195 9h # 0  
 
LOC_Os05g38350-glycerol-3-phosphate acyltransferase 8, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000422-cortical parenchyma cell
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
PO:0020124-root stele
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 0  
  4 2 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] EO:0007024 9h # 0  
  4 3 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] EO:0007024 9h # 0  
  4 4 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 2  
  4 5 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  4 6 LOC_Os03g17350 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] MCE:1000195 9h # 0  
 
LOC_Os03g17350-white-brown complex homolog protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000422-cortical parenchyma cell
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
PO:0020124-root stele
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] EO:0007024 9h # 1  
  5 2 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] EO:0007024 9h # 1  
  5 3 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] EO:0007024 9h # 1  
  5 4 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0005772[#] PO:0005427[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  5 5 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] MCP:1000422[#] MCP:1000518[23d] MCE:1000195 9h # 1  
  5 6 LOC_Os06g51220 # # 39947 CU:100 # WT # MCP:1000559[#] PO:0020124[#] MCP:1000518[23d] MCE:1000195 9h # 1  
 
LOC_Os06g51220-HMG1/2, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
d-Days
h-Hours
MCP:1000422-cortical parenchyma cell
MCP:1000518-seedling development stage
MCP:1000559-long adventitious root
PO:0005427-sclerenchyma
PO:0005772-exodermis
PO:0020124-root stele
EO:0007024-aerobic environment
MCE:1000195-hypoxic environment
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India