Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24976122 3.B.ii F Gene expression analysis (transcription) : Quantitative RT-PCR OsNCED1-LOC_Os02g47510;OsNCED2-LOC_Os12g24800;OsNCED3-LOC_Os03g44380; OsNCED4-LOC_Os07g05940; OsNCED5-LOC_Os12g42280(supplementary). Fig 3.B has been split into 3 parts.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os02g47510 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000330[#] # # 0.00928  
  1 2 LOC_Os02g47510 # # 39947 CU:138 # # # PO:0009010[#] PO:0007616[#] # # 0.01843  
  1 3 LOC_Os02g47510 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000204[#] # # 0.0138  
  1 4 LOC_Os02g47510 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000454[#] # # 0.1332  
  1 5 LOC_Os02g47510 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000376[#] # # 0.62437  
  1 6 LOC_Os02g47510 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000473[#] # # 0.17904  
  1 7 LOC_Os02g47510 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000477[#] # # 0.18832  
  1 8 LOC_Os02g47510 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000505[#] # # 0.19832  
 
LOC_Os02g47510-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
MCP:1000204-5 days post-anthesis stage
MCP:1000330-pre-anthesis stage
MCP:1000376-15 days post-anthesis stage
MCP:1000454-10 days post-anthesis stage
MCP:1000473-20 days post-anthesis stage
MCP:1000477-25 days post-anthesis stage
MCP:1000505-30 days post-anthesis stage
PO:0007616-4 anthesis
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os12g24800 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000330[#] # # 0.00928  
  2 2 LOC_Os12g24800 # # 39947 CU:138 # # # PO:0009010[#] PO:0007616[#] # # 0.01843  
  2 3 LOC_Os12g24800 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000204[#] # # 0.0138  
  2 4 LOC_Os12g24800 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000454[#] # # 0.1332  
  2 5 LOC_Os12g24800 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000376[#] # # 0.95502  
  2 6 LOC_Os12g24800 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000473[#] # # 0.06885  
  2 7 LOC_Os12g24800 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000477[#] # # 0.147  
  2 8 LOC_Os12g24800 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000505[#] # # 0.52791  
 
LOC_Os12g24800-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
MCP:1000204-5 days post-anthesis stage
MCP:1000330-pre-anthesis stage
MCP:1000376-15 days post-anthesis stage
MCP:1000454-10 days post-anthesis stage
MCP:1000473-20 days post-anthesis stage
MCP:1000477-25 days post-anthesis stage
MCP:1000505-30 days post-anthesis stage
PO:0007616-4 anthesis
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os03g44380 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000330[#] # # 0.00928  
  3 2 LOC_Os03g44380 # # 39947 CU:138 # # # PO:0009010[#] PO:0007616[#] # # 0.01843  
  3 3 LOC_Os03g44380 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000204[#] # # 0.0138  
  3 4 LOC_Os03g44380 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000454[#] # # 0.1332  
  3 5 LOC_Os03g44380 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000376[#] # # 0.21115  
  3 6 LOC_Os03g44380 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000473[#] # # 0.06899  
  3 7 LOC_Os03g44380 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000477[#] # # 0.06415  
  3 8 LOC_Os03g44380 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000505[#] # # 0.15601  
 
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
MCP:1000204-5 days post-anthesis stage
MCP:1000330-pre-anthesis stage
MCP:1000376-15 days post-anthesis stage
MCP:1000454-10 days post-anthesis stage
MCP:1000473-20 days post-anthesis stage
MCP:1000477-25 days post-anthesis stage
MCP:1000505-30 days post-anthesis stage
PO:0007616-4 anthesis
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os07g05940 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000330[#] # # 0.00928  
  4 2 LOC_Os07g05940 # # 39947 CU:138 # # # PO:0009010[#] PO:0007616[#] # # 0.01843  
  4 3 LOC_Os07g05940 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000204[#] # # 0.0138  
  4 4 LOC_Os07g05940 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000454[#] # # 0.1332  
  4 5 LOC_Os07g05940 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000376[#] # # 0.21115  
  4 6 LOC_Os07g05940 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000473[#] # # 0.06899  
  4 7 LOC_Os07g05940 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000477[#] # # 0.06415  
  4 8 LOC_Os07g05940 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000505[#] # # 0.15601  
 
LOC_Os07g05940-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
MCP:1000204-5 days post-anthesis stage
MCP:1000330-pre-anthesis stage
MCP:1000376-15 days post-anthesis stage
MCP:1000454-10 days post-anthesis stage
MCP:1000473-20 days post-anthesis stage
MCP:1000477-25 days post-anthesis stage
MCP:1000505-30 days post-anthesis stage
PO:0007616-4 anthesis
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os12g42280 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000330[#] # # 0.00928  
  5 2 LOC_Os12g42280 # # 39947 CU:138 # # # PO:0009010[#] PO:0007616[#] # # 0.01843  
  5 3 LOC_Os12g42280 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000204[#] # # 0.0138  
  5 4 LOC_Os12g42280 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000454[#] # # 0.1332  
  5 5 LOC_Os12g42280 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000376[#] # # 0.95502  
  5 6 LOC_Os12g42280 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000473[#] # # 0.17904  
  5 7 LOC_Os12g42280 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000477[#] # # 0.18832  
  5 8 LOC_Os12g42280 # # 39947 CU:138 # # # PO:0009010[#] MCP:1000505[#] # # 0.55552  
 
LOC_Os12g42280-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:138-cv. Zhonghua 11
MCP:1000204-5 days post-anthesis stage
MCP:1000330-pre-anthesis stage
MCP:1000376-15 days post-anthesis stage
MCP:1000454-10 days post-anthesis stage
MCP:1000473-20 days post-anthesis stage
MCP:1000477-25 days post-anthesis stage
MCP:1000505-30 days post-anthesis stage
PO:0007616-4 anthesis
PO:0009010-seed
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India