Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  24976122 5.A.i F Gene expression analysis (transcription) : Quantitative RT-PCR OsNCED1-LOC_Os02g47510;OsNCED2-LOC_Os12g24800;OsNCED3-LOC_Os03g44380; OsNCED4-LOC_Os07g05940; OsNCED5-LOC_Os12g42280(supplementary).Fig 5.A has been split into 9 parts. Seeds were taken after 0 to 72 h of imbibition.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os02g47510 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[#] # # 0.03461
grp_1_1_1
 
  1 2 LOC_Os02g47510 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.03644  
  1 3 LOC_Os02g47510 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.00898  
  1 4 LOC_Os02g47510 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[36h] # 36h # 0.00452  
  1 5 LOC_Os02g47510 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.00358  
  1 6 LOC_Os02g47510 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[60h] # 60h # 0.0033  
  1 7 LOC_Os02g47510 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[72h] # 72h # 0.00444  
 
LOC_Os02g47510-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39946-Oryza sativa (indica group)
CU:236-Gang 46B
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os12g24800 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[#] # # 0.02135
grp_2_1_1
 
  2 2 LOC_Os12g24800 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.00715  
  2 3 LOC_Os12g24800 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.0034  
  2 4 LOC_Os12g24800 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[36h] # 36h # 0.00452  
  2 5 LOC_Os12g24800 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.00358  
  2 6 LOC_Os12g24800 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[60h] # 60h # 0.0033  
  2 7 LOC_Os12g24800 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[72h] # 72h # 0.00444  
 
LOC_Os12g24800-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39946-Oryza sativa (indica group)
CU:236-Gang 46B
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os03g44380 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[#] # # 0.07369
grp_3_1_1
 
  3 2 LOC_Os03g44380 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.01761  
  3 3 LOC_Os03g44380 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.01038  
  3 4 LOC_Os03g44380 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[36h] # 36h # 0.00452  
  3 5 LOC_Os03g44380 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.00358  
  3 6 LOC_Os03g44380 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[60h] # 60h # 0.0033  
  3 7 LOC_Os03g44380 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[72h] # 72h # 0.00444  
 
LOC_Os03g44380-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39946-Oryza sativa (indica group)
CU:236-Gang 46B
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os01g59660 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[#] # # 0.02136
grp_4_1_1
 
  4 2 LOC_Os01g59660 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.00436  
  4 3 LOC_Os01g59660 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.00688  
  4 4 LOC_Os01g59660 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[36h] # 36h # 0.00452  
  4 5 LOC_Os01g59660 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.00358  
  4 6 LOC_Os01g59660 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[60h] # 60h # 0.0033  
  4 7 LOC_Os01g59660 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[72h] # 72h # 0.00444  
 
LOC_Os01g59660-MYB family transcription factor, putative, expressed
39946-Oryza sativa (indica group)
CU:236-Gang 46B
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os12g42280 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[#] # # 0.01579
grp_5_1_1
 
  5 2 LOC_Os12g42280 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[12h] # 12h # 0.03017  
  5 3 LOC_Os12g42280 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[24h] # 24h # 0.0083  
  5 4 LOC_Os12g42280 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[36h] # 36h # 0.01428  
  5 5 LOC_Os12g42280 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[48h] # 48h # 0.00358  
  5 6 LOC_Os12g42280 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[60h] # 60h # 0.0033  
  5 7 LOC_Os12g42280 # # 39946 CU:236 # WT # PO:0009010[#] PO:0007022[72h] # 72h # 0.00444  
 
LOC_Os12g42280-9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
39946-Oryza sativa (indica group)
CU:236-Gang 46B
WT-Wild Type
h-Hours
h-Hours
PO:0007022-imbibition
PO:0009010-seed
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India