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Regulation details
PubMed Id
Figure
Type
Experimental method
Comment
25061741
4.A.ii
F
Gene expression analysis (transcription) : Quantitative RT-PCR
Seedlings of all 3 cultivars Zonghua11 , Nipponbare (japonica), and 93-11 (indica) were subjected to salt and osmotic stress. PEG6000 was used. Statistically significant difference is considered as P<0.01.Fig 4 has been split into 3 parts.
Row
Col.
Gene analysed
Transgene
Prom. Id
Taxon Id
Culti. Id /
Ecotype
Mutant Id
Plant type
Trans. Id
Plant Ont.
Env. Ont.
Trait Ont.
Relative expression
1
1
LOC_Os05g13790
#
#
4530
#
#
WT
#
PO:0009005[#] MCP:1000518[2w]
# 12h
#
1.08333 grp_1_1_1
1
2
LOC_Os05g13790
#
#
4530
#
#
WT
#
PO:0009005[#] MCP:1000518[2w]
EO:0007048 150mM 12h
#
0.57692
1
3
LOC_Os05g13790
#
#
4530
#
#
WT
#
PO:0009005[#] MCP:1000518[2w]
MCE:1000016 20% 12h
#
0.75
LOC_Os05g13790
-
expressed protein
4530
-
Oryza Sativa
WT
-
Wild Type
w
-
Weeks
mM
-
millimolar
h
-
Hours
MCP:1000518
-
seedling development stage
PO:0009005
-
root
EO:0007048
-
sodium chloride regimen
MCE:1000016
-
polyethylene glycol (PEG) treatment
Row
Col.
Gene analysed
Transgene
Prom. Id
Taxon Id
Culti. Id /
Ecotype
Mutant Id
Plant type
Trans. Id
Plant Ont.
Env. Ont.
Trait Ont.
Relative expression
2
1
LOC_Os05g13790
#
#
4530
#
#
WT
#
PO:0009006[#] MCP:1000518[2w]
# 12h
#
1 grp_2_1_1
2
2
LOC_Os05g13790
#
#
4530
#
#
WT
#
PO:0009006[#] MCP:1000518[2w]
EO:0007048 150mM 12h
#
0.13675
2
3
LOC_Os05g13790
#
#
4530
#
#
WT
#
PO:0009006[#] MCP:1000518[2w]
MCE:1000016 20% 12h
#
1.66667
LOC_Os05g13790
-
expressed protein
4530
-
Oryza Sativa
WT
-
Wild Type
w
-
Weeks
mM
-
millimolar
h
-
Hours
MCP:1000518
-
seedling development stage
PO:0009006
-
shoot system
EO:0007048
-
sodium chloride regimen
MCE:1000016
-
polyethylene glycol (PEG) treatment
Functional details
PubMed Id
Figure
Type
Experimental Method
Comment
25061741
4.A.ii
F
Gene expression analysis (transcription) : Quantitative RT-PCR
S. No.
Locus Id 1
GO Id
Dep. loc
Dep. type
From
To
Motif
1
LOC_Os05g13790
GO:0006970
#
#
#
#
#
2
LOC_Os05g13790
GO:0009651
#
#
#
#
#
LOC_Os05g13790
-
expressed protein
GO:0006970
-
response to osmotic stress
GO:0009651
-
response to salt stress
Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India