| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
25061741 |
6.A |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
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| |
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|
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|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os03g12570 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
 0.72581 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os03g12570 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0 |
|
| |
1 |
3 |
LOC_Os03g12570 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
0 |
|
|
| |
LOC_Os03g12570-expressed protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os05g13790 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
0.96774 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os05g13790 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.48387 |
|
| |
2 |
3 |
LOC_Os05g13790 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
1.85484 |
|
|
| |
LOC_Os05g13790-expressed protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
LOC_Os10g01570 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
0.96774 grp_3_1_1 |
|
| |
3 |
2 |
LOC_Os10g01570 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.56452 |
|
| |
3 |
3 |
LOC_Os10g01570 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
0.56452 |
|
|
| |
LOC_Os10g01570-C-5 cytosine-specific DNA methylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
4 |
1 |
LOC_Os01g42630 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
1.20968 grp_4_1_1 |
|
| |
4 |
2 |
LOC_Os01g42630 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
2.09677 |
|
| |
4 |
3 |
LOC_Os01g42630 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
3.46774 |
|
|
| |
LOC_Os01g42630-C-5 cytosine-specific DNA methylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
5 |
1 |
LOC_Os03g58400 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
0.96774 grp_5_1_1 |
|
| |
5 |
2 |
LOC_Os03g58400 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.56452 |
|
| |
5 |
3 |
LOC_Os03g58400 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
2.5 |
|
|
| |
LOC_Os03g58400-C-5 cytosine-specific DNA methylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
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|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
6 |
1 |
LOC_Os07g08500 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
0.80645 grp_6_1_1 |
|
| |
6 |
2 |
LOC_Os07g08500 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
2.01613 |
|
| |
6 |
3 |
LOC_Os07g08500 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
1.29032 |
|
|
| |
LOC_Os07g08500-C-5 cytosine-specific DNA methylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
7 |
1 |
LOC_Os11g01810 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
0.80645 grp_7_1_1 |
|
| |
7 |
2 |
LOC_Os11g01810 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
11.20968 |
|
| |
7 |
3 |
LOC_Os11g01810 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
7.01613 |
|
|
| |
LOC_Os11g01810-DNA methyltransferase protein, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
8 |
1 |
LOC_Os12g01800 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
0.8871 grp_8_1_1 |
|
| |
8 |
2 |
LOC_Os12g01800 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
29.1129 |
|
| |
8 |
3 |
LOC_Os12g01800 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
26.45161 |
|
|
| |
LOC_Os12g01800-DNA cytosine methyltransferase Zmet3, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
9 |
1 |
LOC_Os03g02010 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
0.40323 grp_9_1_1 |
|
| |
9 |
2 |
LOC_Os03g02010 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
0.8871 |
|
| |
9 |
3 |
LOC_Os03g02010 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
3.14516 |
|
|
| |
LOC_Os03g02010-DNA methyltransferase protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
10 |
1 |
LOC_Os05g04330 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
# 12h |
# |
0.80645 grp_10_1_1 |
|
| |
10 |
2 |
LOC_Os05g04330 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
EO:0007048 150mM 12h |
# |
1.69355 |
|
| |
10 |
3 |
LOC_Os05g04330 |
# |
# |
39947 |
CU:100 |
# |
WT |
# |
PO:0008037[#] MCP:1000518[2w] |
MCE:1000016 20% 12h |
# |
3.70968 |
|
|
| |
LOC_Os05g04330-DNA methyltransferase protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
|
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
|
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
|
|
| |
|
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