Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  25061741 6.A F Gene expression analysis (transcription) : Quantitative RT-PCR  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os03g12570 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.72581
grp_1_1_1
 
  1 2 LOC_Os03g12570 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0  
  1 3 LOC_Os03g12570 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 0  
 
LOC_Os03g12570-expressed protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os05g13790 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.96774
grp_2_1_1
 
  2 2 LOC_Os05g13790 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.48387  
  2 3 LOC_Os05g13790 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 1.85484  
 
LOC_Os05g13790-expressed protein
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os10g01570 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.96774
grp_3_1_1
 
  3 2 LOC_Os10g01570 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.56452  
  3 3 LOC_Os10g01570 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 0.56452  
 
LOC_Os10g01570-C-5 cytosine-specific DNA methylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os01g42630 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 1.20968
grp_4_1_1
 
  4 2 LOC_Os01g42630 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 2.09677  
  4 3 LOC_Os01g42630 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 3.46774  
 
LOC_Os01g42630-C-5 cytosine-specific DNA methylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os03g58400 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.96774
grp_5_1_1
 
  5 2 LOC_Os03g58400 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.56452  
  5 3 LOC_Os03g58400 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 2.5  
 
LOC_Os03g58400-C-5 cytosine-specific DNA methylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os07g08500 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.80645
grp_6_1_1
 
  6 2 LOC_Os07g08500 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 2.01613  
  6 3 LOC_Os07g08500 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 1.29032  
 
LOC_Os07g08500-C-5 cytosine-specific DNA methylase, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  7 1 LOC_Os11g01810 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.80645
grp_7_1_1
 
  7 2 LOC_Os11g01810 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 11.20968  
  7 3 LOC_Os11g01810 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 7.01613  
 
LOC_Os11g01810-DNA methyltransferase protein, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  8 1 LOC_Os12g01800 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.8871
grp_8_1_1
 
  8 2 LOC_Os12g01800 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 29.1129  
  8 3 LOC_Os12g01800 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 26.45161  
 
LOC_Os12g01800-DNA cytosine methyltransferase Zmet3, putative
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  9 1 LOC_Os03g02010 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.40323
grp_9_1_1
 
  9 2 LOC_Os03g02010 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 0.8871  
  9 3 LOC_Os03g02010 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 3.14516  
 
LOC_Os03g02010-DNA methyltransferase protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  10 1 LOC_Os05g04330 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] # 12h # 0.80645
grp_10_1_1
 
  10 2 LOC_Os05g04330 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] EO:0007048 150mM 12h # 1.69355  
  10 3 LOC_Os05g04330 # # 39947 CU:100 # WT # PO:0008037[#] MCP:1000518[2w] MCE:1000016 20% 12h # 3.70968  
 
LOC_Os05g04330-DNA methyltransferase protein, putative, expressed
39947-Oryza sativa japonica group
CU:100-cv. Nipponbare, cv. GA3, cv. Nipponbare / Japonica
WT-Wild Type
w-Weeks
mM-millimolar
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
EO:0007048-sodium chloride regimen
MCE:1000016-polyethylene glycol (PEG) treatment
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India