Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  25256506 4.A,B F Gene expression analysis (transcription) : Semi-quantitative RT-PCR OsIAA11 -LOC_Os03g43400;OsARF1 -LOC_Os11g32110;ARL1 -AAV49505;OsPIN1 -LOC_Os02g50960(Primer BLAST). Statistically significant difference was calculated at P<0.05. The rice cultivar used in the experiment was Liangyou 287, a temperature sensing type two-line hybrid rice.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # # 0.3
grp_1_1_1
grp_1_1_2
 
  1 2 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # # 0.4125
grp_1_2_1
 
  1 3 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 12h # 0.6125
grp_1_3_1
 
  1 4 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 12h # 1.45  
  1 5 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 24h # 0.7125
grp_1_5_1
 
  1 6 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 24h # 1.4375  
  1 7 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 48h # 0.65
grp_1_7_1
 
  1 8 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 48h # 1.2875  
  1 9 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 72h # 0.7875
grp_1_9_1
 
  1 10 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 72h # 1.325  
  1 11 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 96h # 1.1625
grp_1_11_1
 
  1 12 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 96h # 0.6875  
  1 13 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 120h # 0.9125
grp_1_13_1
 
  1 14 LOC_Os03g43400 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 120h # 0.2375  
 
LOC_Os03g43400-OsIAA11 - Auxin-responsive Aux/IAA gene family member, expressed
4530-Oryza Sativa
WT-Wild Type
d-Days
mg∕L-milligrams per litre
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
MCE:1000347-alginate oligosaccharide
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # # 0.56774
grp_2_1_1
grp_2_1_2
 
  2 2 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # # 0.65806
grp_2_2_1
 
  2 3 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 12h # 0.86452
grp_2_3_1
 
  2 4 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 12h # 1.09677  
  2 5 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 24h # 1.04516
grp_2_5_1
 
  2 6 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 24h # 1.26452  
  2 7 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 48h # 1.03226
grp_2_7_1
 
  2 8 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 48h # 1.04516  
  2 9 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 72h # 1.1871
grp_2_9_1
 
  2 10 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 72h # 1.2129  
  2 11 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 96h # 1.2
grp_2_11_1
 
  2 12 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 96h # 1.22581  
  2 13 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 120h # 1.32903
grp_2_13_1
 
  2 14 LOC_Os11g32110 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 120h # 1.44516  
 
LOC_Os11g32110-auxin response factor, putative, expressed
4530-Oryza Sativa
WT-Wild Type
d-Days
mg∕L-milligrams per litre
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
MCE:1000347-alginate oligosaccharide
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # # 0.69058
grp_3_1_1
grp_3_1_2
 
  3 2 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # # 0.78292
grp_3_2_1
 
  3 3 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 12h # 0.77365
grp_3_3_1
 
  3 4 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 12h # 1.12725  
  3 5 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 24h # 0.83144
grp_3_5_1
 
  3 6 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 24h # 1.15132  
  3 7 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 48h # 0.83869
grp_3_7_1
 
  3 8 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 48h # 0.90576  
  3 9 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 72h # 0.83743
grp_3_9_1
 
  3 10 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 72h # 1.13203  
  3 11 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 96h # 0.96264
grp_3_11_1
 
  3 12 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 96h # 0.97919  
  3 13 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 120h # 0.92775
grp_3_13_1
 
  3 14 AAV49505 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 120h # 0.85992  
 
AAV49505- adventitious rootless1
4530-Oryza Sativa
WT-Wild Type
d-Days
mg∕L-milligrams per litre
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
MCE:1000347-alginate oligosaccharide
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # # 0.21176
grp_4_1_1
grp_4_1_2
 
  4 2 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # # 0.16235
grp_4_2_1
 
  4 3 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 12h # 0.24
grp_4_3_1
 
  4 4 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 12h # 0.49412  
  4 5 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 24h # 0.49412
grp_4_5_1
 
  4 6 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 24h # 0.66353  
  4 7 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 48h # 0.42353
grp_4_7_1
 
  4 8 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 48h # 0.75529  
  4 9 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 72h # 0.52235
grp_4_9_1
 
  4 10 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 72h # 0.75529  
  4 11 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 96h # 0.40941
grp_4_11_1
 
  4 12 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 96h # 0.79765  
  4 13 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] # 120h # 0.47294
grp_4_13_1
 
  4 14 LOC_Os02g50960 # # 4530 # # WT # PO:0008037[#] MCP:1000518[5d] MCE:1000347 20mg∕L 120h # 0.41647  
 
LOC_Os02g50960-auxin efflux carrier component, putative, expressed
4530-Oryza Sativa
WT-Wild Type
d-Days
mg∕L-milligrams per litre
h-Hours
MCP:1000518-seedling development stage
PO:0008037-seedling
MCE:1000347-alginate oligosaccharide
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India