Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  25311360 9.D F Gene expression analysis (transcription) : Quantitative RT-PCR OsAUX1-LOC_Os01g63770; OsTIR1-LOC_Os02g52230;OsIAA19-LOC_Os05g48590; OsIAA23-LOC_Os06g39590; OsCycD4;1-LOC_Os10g41430; OsCycD5;2-LOC_Os12g39830; OsCDKC;2-LOC_Os03g22700.  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os02g52230 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] # # 0.47573
grp_1_1_1
grp_1_1_2
 
  1 2 LOC_Os02g52230 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] # # 0.0534
grp_1_2_1
 
  1 3 LOC_Os02g52230 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.48058
grp_1_3_1
 
  1 4 LOC_Os02g52230 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.51456  
 
LOC_Os01g63770-transmembrane amino acid transporter protein, putative, expressed
LOC_Os02g52230-coronatine-insensitive protein 1, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
MCP:1000518-seedling development stage
PO:0009005-root
EO:0007204-1-naphthaleneacetic acid
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os05g48590 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] # # 0.20874
grp_2_1_1
grp_2_1_2
 
  2 2 LOC_Os05g48590 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] # # 0.09709
grp_2_2_1
 
  2 3 LOC_Os05g48590 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.79126
grp_2_3_1
 
  2 4 LOC_Os05g48590 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.80583  
 
LOC_Os01g63770-transmembrane amino acid transporter protein, putative, expressed
LOC_Os05g48590-OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
MCP:1000518-seedling development stage
PO:0009005-root
EO:0007204-1-naphthaleneacetic acid
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os06g39590 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] # # 0.3301
grp_3_1_1
grp_3_1_2
 
  3 2 LOC_Os06g39590 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] # # 0.19417
grp_3_2_1
 
  3 3 LOC_Os06g39590 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.23786
grp_3_3_1
 
  3 4 LOC_Os06g39590 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.25728  
 
LOC_Os01g63770-transmembrane amino acid transporter protein, putative, expressed
LOC_Os06g39590-OsIAA23 - Auxin-responsive Aux/IAA gene family member, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
MCP:1000518-seedling development stage
PO:0009005-root
EO:0007204-1-naphthaleneacetic acid
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os09g29100 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] # # 0.17961
grp_4_1_1
grp_4_1_2
 
  4 2 LOC_Os09g29100 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] # # 0.05825
grp_4_2_1
 
  4 3 LOC_Os09g29100 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.67961
grp_4_3_1
 
  4 4 LOC_Os09g29100 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.66505  
 
LOC_Os01g63770-transmembrane amino acid transporter protein, putative, expressed
LOC_Os09g29100-cyclin, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
MCP:1000518-seedling development stage
PO:0009005-root
EO:0007204-1-naphthaleneacetic acid
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  5 1 LOC_Os12g39830 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] # # 0.15534
grp_5_1_1
grp_5_1_2
 
  5 2 LOC_Os12g39830 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] # # 0.08252
grp_5_2_1
 
  5 3 LOC_Os12g39830 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.36408
grp_5_3_1
 
  5 4 LOC_Os12g39830 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.3835  
 
LOC_Os01g63770-transmembrane amino acid transporter protein, putative, expressed
LOC_Os12g39830-cyclin, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
MCP:1000518-seedling development stage
PO:0009005-root
EO:0007204-1-naphthaleneacetic acid
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  6 1 LOC_Os03g22700 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] # # 0.04369
grp_6_1_1
grp_6_1_2
 
  6 2 LOC_Os03g22700 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] # # 0.02427
grp_6_2_1
 
  6 3 LOC_Os03g22700 # # 39947 CU:021 # WT # PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.15049
grp_6_3_1
 
  6 4 LOC_Os03g22700 LOC_Os01g63770 # 39947 CU:021 # TDNA 1 PO:0009005[#] MCP:1000518[7d] EO:0007204 0.01然 # 0.15534  
 
LOC_Os01g63770-transmembrane amino acid transporter protein, putative, expressed
LOC_Os03g22700-cyclin-dependent kinase C-2, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
TDNA-TDNA mutant
WT-Wild Type
d-Days
-
MCP:1000518-seedling development stage
PO:0009005-root
EO:0007204-1-naphthaleneacetic acid
 
     

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India