Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  25454526 4.A F Gene expression analysis (transcription) : Quantitative RT-PCR HEMA1-LOC_Os10g35840;GSA-LOC_Os08g41990;ALAD-LOC_Os06g49110;PPO1-LOC_Os01g18320(Primer BLAST ).  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os10g35840 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_1_1_1
 
  1 2 LOC_Os10g35840 # # 63632 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.26181  
  1 3 LOC_Os10g35840 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.9167  
  1 4 LOC_Os10g35840 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 2d # 0.96575
grp_1_4_1
 
  1 5 LOC_Os10g35840 # # 63632 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.0677  
  1 6 LOC_Os10g35840 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.1108  
 
LOC_Os10g35840-shikimate/quinate 5-dehydrogenase, putative, expressed
39947-Oryza sativa japonica group
63632-Agrostis stolonifera (creeping bent grass)
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os08g41990 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_2_1_1
 
  2 2 LOC_Os08g41990 # # 63632 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.45073  
  2 3 LOC_Os08g41990 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.97171  
  2 4 LOC_Os08g41990 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 2d # 1.16488
grp_2_4_1
 
  2 5 LOC_Os08g41990 # # 63632 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.50927  
  2 6 LOC_Os08g41990 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.37463  
 
LOC_Os08g41990-aminotransferase, putative, expressed
39947-Oryza sativa japonica group
63632-Agrostis stolonifera (creeping bent grass)
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os06g49110 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_3_1_1
 
  3 2 LOC_Os06g49110 # # 63632 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.36179  
  3 3 LOC_Os06g49110 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.48337  
  3 4 LOC_Os06g49110 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 2d # 1.20494
grp_3_4_1
 
  3 5 LOC_Os06g49110 # # 63632 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.27357  
  3 6 LOC_Os06g49110 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.3128  
 
LOC_Os06g49110-delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
63632-Agrostis stolonifera (creeping bent grass)
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os01g18320 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_4_1_1
 
  4 2 LOC_Os01g18320 # # 63632 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.78439  
  4 3 LOC_Os01g18320 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.92488  
  4 4 LOC_Os01g18320 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 2d # 1.14146
grp_4_4_1
 
  4 5 LOC_Os01g18320 # # 63632 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.28683  
  4 6 LOC_Os01g18320 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.40976  
 
LOC_Os01g18320-protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
63632-Agrostis stolonifera (creeping bent grass)
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  25454526 4.A F Gene expression analysis (transcription) : Quantitative RT-PCR HEMA1-LOC_Os10g35840;GSA-LOC_Os08g41990;ALAD-LOC_Os06g49110;PPO1-LOC_Os01g18320(Primer BLAST ).oxyfluorfen is used as herbicide.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os01g18320 GO:0009635 # # # # #            
  2 LOC_Os06g49110 GO:0009635 # # # # #            
  3 LOC_Os08g41990 GO:0009635 # # # # #            
  4 LOC_Os10g35840 GO:0009635 # # # # #            
 
LOC_Os01g18320-protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os06g49110-delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os08g41990-aminotransferase, putative, expressed
LOC_Os10g35840-shikimate/quinate 5-dehydrogenase, putative, expressed
GO:0009635-response to herbicide
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India