Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  25454526 4.B F Gene expression analysis (transcription) : Quantitative RT-PCR CHLD-LOC_Os03g59640;CHLH-LOC_Os03g20700;CHLI-LOC_Os03g36540;PORB-LOC_Os10g35370(Primer BLAST).  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os03g59640 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_1_1_1
 
  1 2 LOC_Os03g59640 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.84854  
  1 3 LOC_Os03g59640 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.9841  
  1 4 LOC_Os03g59640 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] # 2d # 0.92385
grp_1_4_1
 
  1 5 LOC_Os03g59640 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.23598  
  1 6 LOC_Os03g59640 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.81841  
 
LOC_Os03g59640-magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os03g20700 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_2_1_1
 
  2 2 LOC_Os03g20700 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.58624  
  2 3 LOC_Os03g20700 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.65208  
  2 4 LOC_Os03g20700 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] # 2d # 1.03293
grp_2_4_1
 
  2 5 LOC_Os03g20700 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.02871  
  2 6 LOC_Os03g20700 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.09456  
 
LOC_Os03g20700-magnesium-chelatase, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os03g36540 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_3_1_1
 
  3 2 LOC_Os03g36540 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.72709  
  3 3 LOC_Os03g36540 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.83941  
  3 4 LOC_Os03g36540 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] # 2d # 1.12906
grp_3_4_1
 
  3 5 LOC_Os03g36540 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.19507  
  3 6 LOC_Os03g36540 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.4197  
 
LOC_Os03g36540-magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  4 1 LOC_Os10g35370 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_4_1_1
 
  4 2 LOC_Os10g35370 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.24204  
  4 3 LOC_Os10g35370 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.42656  
  4 4 LOC_Os10g35370 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] # 2d # 1.14444
grp_4_4_1
 
  4 5 LOC_Os10g35370 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.071  
  4 6 LOC_Os10g35370 # # 39947 CU:021 # # # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.1628  
 
LOC_Os10g35370-oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  25454526 4.B F Gene expression analysis (transcription) : Quantitative RT-PCR CHLH-LOC_Os03g20700;CHLI-LOC_Os03g36540;PORB-LOC_Os10g35370(Primer BLAST).oxyfluorfen is used as herbicide.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os03g20700 GO:0009635 # # # # #            
  2 LOC_Os03g36540 GO:0009635 # # # # #            
  3 LOC_Os10g35370 GO:0009635 # # # # #            
 
LOC_Os03g20700-magnesium-chelatase, putative, expressed
LOC_Os03g36540-magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
LOC_Os10g35370-oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
GO:0009635-response to herbicide
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India