Figure Details Page
Regulation details
PubMed Id Figure
Type Experimental method Comment  
  25454526 5 F Gene expression analysis (transcription) : Quantitative RT-PCR Lhcb1-LOC_Os09g17740;Lhcb6-LOC_Os04g38410;RbcS-LOC_Os12g19381(Primer BLAST).  
             
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  1 1 LOC_Os09g17740 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_1_1_1
 
  1 2 LOC_Os09g17740 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.42609  
  1 3 LOC_Os09g17740 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.5113  
  1 4 LOC_Os09g17740 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 2d # 0.8887
grp_1_4_1
 
  1 5 LOC_Os09g17740 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.0487  
  1 6 LOC_Os09g17740 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.14609  
 
LOC_Os09g17740-chlorophyll A-B binding protein, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  2 1 LOC_Os04g38410 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_2_1_1
 
  2 2 LOC_Os04g38410 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.68591  
  2 3 LOC_Os04g38410 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.75125  
  2 4 LOC_Os04g38410 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 2d # 1.05173
grp_2_4_1
 
  2 5 LOC_Os04g38410 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.07386  
  2 6 LOC_Os04g38410 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.21157  
 
LOC_Os04g38410-chlorophyll A-B binding protein, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
  Row Col. Gene analysed Transgene Prom. Id Taxon Id Culti. Id /
Ecotype
Mutant Id Plant type Trans. Id Plant Ont. Env. Ont. Trait Ont. Relative expression  
  3 1 LOC_Os12g19381 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 1d # 1
grp_3_1_1
 
  3 2 LOC_Os12g19381 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 1d # 0.72814  
  3 3 LOC_Os12g19381 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 1d # 0.83568  
  3 4 LOC_Os12g19381 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] # 2d # 1.10601
grp_3_4_1
 
  3 5 LOC_Os12g19381 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000351 5mM 2d # 0.20651  
  3 6 LOC_Os12g19381 # # 39947 CU:021 # WT # PO:0025034[#] MCP:1000518[3w] MCE:1000352 50然 2d # 0.38035  
 
LOC_Os12g19381-ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
WT-Wild Type
w-Weeks
mM-millimolar
-
d-Days
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
 
     
Functional details
PubMed Id Figure
Type Experimental Method Comment  
  25454526 5 F Gene expression analysis (transcription) : Quantitative RT-PCR Lhcb1-LOC_Os09g17740;Lhcb6-LOC_Os04g38410;RbcS-LOC_Os12g19381(Primer BLAST).oxyfluorfen is used as herbicide.  
  S. No. Locus Id 1 GO Id Dep. loc Dep. type From To Motif    
  1 LOC_Os04g38410 GO:0009635 # # # # #            
  2 LOC_Os09g17740 GO:0009635 # # # # #            
  3 LOC_Os12g19381 GO:0009635 # # # # #            
 
LOC_Os04g38410-chlorophyll A-B binding protein, putative, expressed
LOC_Os09g17740-chlorophyll A-B binding protein, putative, expressed
LOC_Os12g19381-ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
GO:0009635-response to herbicide
 

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India