| Regulation details |
|
PubMed Id |
Figure
|
Type |
Experimental method |
Comment |
|
| |
25454526 |
5 |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
Lhcb1-LOC_Os09g17740;Lhcb6-LOC_Os04g38410;RbcS-LOC_Os12g19381(Primer BLAST).
|
|
| |
|
|
|
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
1 |
1 |
LOC_Os09g17740 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
# 1d |
# |
 1 grp_1_1_1 |
|
| |
1 |
2 |
LOC_Os09g17740 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000351 5mM 1d |
# |
0.42609 |
|
| |
1 |
3 |
LOC_Os09g17740 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000352 50然 1d |
# |
0.5113 |
|
| |
1 |
4 |
LOC_Os09g17740 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
# 2d |
# |
0.8887 grp_1_4_1 |
|
| |
1 |
5 |
LOC_Os09g17740 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000351 5mM 2d |
# |
0.0487 |
|
| |
1 |
6 |
LOC_Os09g17740 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000352 50然 2d |
# |
0.14609 |
|
|
| |
LOC_Os09g17740-chlorophyll A-B binding protein, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
|
WT-Wild Type
w-Weeks
mM-millimolar
然-
d-Days
|
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
2 |
1 |
LOC_Os04g38410 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
# 1d |
# |
1 grp_2_1_1 |
|
| |
2 |
2 |
LOC_Os04g38410 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000351 5mM 1d |
# |
0.68591 |
|
| |
2 |
3 |
LOC_Os04g38410 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000352 50然 1d |
# |
0.75125 |
|
| |
2 |
4 |
LOC_Os04g38410 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
# 2d |
# |
1.05173 grp_2_4_1 |
|
| |
2 |
5 |
LOC_Os04g38410 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000351 5mM 2d |
# |
0.07386 |
|
| |
2 |
6 |
LOC_Os04g38410 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000352 50然 2d |
# |
0.21157 |
|
|
| |
LOC_Os04g38410-chlorophyll A-B binding protein, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
|
WT-Wild Type
w-Weeks
mM-millimolar
然-
d-Days
|
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
|
|
| |
|
|
|
|
| |
Row |
Col. |
Gene analysed |
Transgene |
Prom. Id |
Taxon Id |
Culti. Id /
Ecotype |
Mutant Id |
Plant type |
Trans. Id |
Plant Ont. |
Env. Ont. |
Trait Ont. |
Relative expression |
|
| |
3 |
1 |
LOC_Os12g19381 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
# 1d |
# |
1 grp_3_1_1 |
|
| |
3 |
2 |
LOC_Os12g19381 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000351 5mM 1d |
# |
0.72814 |
|
| |
3 |
3 |
LOC_Os12g19381 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000352 50然 1d |
# |
0.83568 |
|
| |
3 |
4 |
LOC_Os12g19381 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
# 2d |
# |
1.10601 grp_3_4_1 |
|
| |
3 |
5 |
LOC_Os12g19381 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000351 5mM 2d |
# |
0.20651 |
|
| |
3 |
6 |
LOC_Os12g19381 |
# |
# |
39947 |
CU:021 |
# |
WT |
# |
PO:0025034[#] MCP:1000518[3w] |
MCE:1000352 50然 2d |
# |
0.38035 |
|
|
| |
LOC_Os12g19381-ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
39947-Oryza sativa japonica group
CU:021-cv. Dongjin, cv. Dongjinbyeo, cv. Donjin, cv. Donjinbyeo, cv. IR348
|
WT-Wild Type
w-Weeks
mM-millimolar
然-
d-Days
|
MCP:1000518-seedling development stage
PO:0025034-leaf
MCE:1000351-5-aminolevulinic acid
MCE:1000352-oxyfluorfen
|
|
| |
|
|
|
|
|
|
| Functional details |
|
PubMed Id |
Figure
|
Type |
Experimental Method |
Comment |
|
| |
25454526 |
5 |
F |
Gene expression analysis (transcription) : Quantitative RT-PCR |
Lhcb1-LOC_Os09g17740;Lhcb6-LOC_Os04g38410;RbcS-LOC_Os12g19381(Primer BLAST).oxyfluorfen is used as herbicide. |
|
|
| |
S. No. |
Locus Id 1 |
GO Id |
Dep. loc |
Dep. type |
From |
To |
Motif |
|
|
| |
1 |
LOC_Os04g38410 |
GO:0009635 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
2 |
LOC_Os09g17740 |
GO:0009635 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
| |
3 |
LOC_Os12g19381 |
GO:0009635 |
# |
# |
# |
# |
# |
|
|
|
|
|
|
|
| |
LOC_Os04g38410-chlorophyll A-B binding protein, putative, expressed
LOC_Os09g17740-chlorophyll A-B binding protein, putative, expressed
LOC_Os12g19381-ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
|
GO:0009635-response to herbicide
|
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|
|
|
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|
