|
Searching for LOC_Os01g25820
[respiratory burst oxidase, putative, expressed ] |
with PubMed Id 22869603
|
|
|
Search entire database for LOC_Os01g25820 |
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os01g25820.1 |
906 |
134 |
232 |
PF08414.2 |
NADPH_Ox |
2 |
LOC_Os01g25820.1 |
906 |
233 |
261 |
PF00036.24 |
efhand |
3 |
LOC_Os01g25820.1 |
906 |
394 |
552 |
PF01794.11 |
Ferric_reduct |
4 |
LOC_Os01g25820.1 |
906 |
592 |
713 |
PF08022.4 |
FAD_binding_8 |
5 |
LOC_Os01g25820.1 |
906 |
719 |
888 |
PF08030.4 |
NAD_binding_6 |
6 |
LOC_Os01g25820.2 |
881 |
134 |
232 |
PF08414.2 |
NADPH_Ox |
7 |
LOC_Os01g25820.2 |
881 |
233 |
261 |
PF00036.24 |
efhand |
8 |
LOC_Os01g25820.2 |
881 |
394 |
552 |
PF01794.11 |
Ferric_reduct |
9 |
LOC_Os01g25820.2 |
881 |
592 |
713 |
PF08022.4 |
FAD_binding_8 |
10 |
LOC_Os01g25820.2 |
881 |
719 |
872 |
PF08030.4 |
NAD_binding_6 |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
Biological process
Cellular component
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007105 |
abscisic acid regimen |
(+) |
|
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0000006 |
plant protoplast |
(+) |
2 |
PO:0009047 |
stem |
(+) |
3 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Shi Ben; Ni Lan; Zhang Aying; Cao Jianmei; Zhang Hong; Qin Tingting; Tan Mingpu; Zhang Jianhua; Jiang Mingyi; OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice. Molecular plant 2012:5
PMID [22869603]
 |
|
|
|