Rice gene details
Searching for LOC_Os01g25820 [respiratory burst oxidase, putative, expressed ]
with PubMed Id 22869603
  Search entire database for LOC_Os01g25820
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g25820.1 906 134 232 PF08414.2 NADPH_Ox
2 LOC_Os01g25820.1 906 233 261 PF00036.24 efhand
3 LOC_Os01g25820.1 906 394 552 PF01794.11 Ferric_reduct
4 LOC_Os01g25820.1 906 592 713 PF08022.4 FAD_binding_8
5 LOC_Os01g25820.1 906 719 888 PF08030.4 NAD_binding_6
6 LOC_Os01g25820.2 881 134 232 PF08414.2 NADPH_Ox
7 LOC_Os01g25820.2 881 233 261 PF00036.24 efhand
8 LOC_Os01g25820.2 881 394 552 PF01794.11 Ferric_reduct
9 LOC_Os01g25820.2 881 592 713 PF08022.4 FAD_binding_8
10 LOC_Os01g25820.2 881 719 872 PF08030.4 NAD_binding_6
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -1
N22 Root FC
  8
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  4

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009607 response to biotic stimulus (RGAP)
3 GO:0008219 cell death (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEN001 blast disease resistance
2 CQAX2 plant height
3 AQEN018 blast disease resistance
4 AQEN011 blast disease resistance
5 AQAI036 leaf area to spikelet number ratio
6 AQAI027 leaf area to spikelet number ratio
7 AQAI006 leaf area
8 AQFU004 head rice
9 AQED048 grain yield per plant
10 AQCU255 spikelet fertility
11 AQCU252 spikelet number
12 AQCU240 spikelet number
13 AQCU182 days to heading
14 AQCU120 days to heading
15 AQCU114 days to heading
16 AQCU070 leaf length
17 AQCU052 days to heading
18 AQEP015 seedling vigor
19 CQX6 culm length
20 CQS5 seminal root length
21 AQGG005 callus induction
22 AQGG006 callus induction
23 AQHE119 plant height
24 AQEY003 1000-seed weight
25 AQGI037 root dry weight
26 AQA044 root to shoot ratio
27 AQAL060 root thickness
28 AQAL048 deep root dry weight
29 CQX21 internode length
30 CQN51 spikelet number
31 CQN5 soluble protein content
32 CQN43 panicle weight
33 CQN26 leaf senescence
34 AQCV031 chalkiness of endosperm
35 CQAO10 1000-seed weight
36 AQCT001 blast disease resistance
37 CQI1 potassium concentration
38 AQAX011 carbohydrate content
39 AQAX003 carbohydrate content
40 AQAW039 filled grain percentage
41 AQAW036 secondary branch
42 AQAW032 filled grain percentage
43 AQAW030 spikelet number
44 AQAW029 spikelet number
45 AQAW024 spikelet number
46 AQAW023 spikelet number
47 CQN49 spikelet number
48 CQN3 soluble protein content
49 CQE3 plant height
50 CQE2 plant height
51 CQE6 specific leaf area
52 CQF2 soluble protein content
53 AQCW010 H2O2 content
54 AQCW002 chlorophyll content
55 CQN53 spikelet number
56 CQN45 panicle weight
57 CQN28 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000006 plant protoplast (+)
2 PO:0009047 stem (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Shi Ben; Ni Lan; Zhang Aying; Cao Jianmei; Zhang Hong; Qin Tingting; Tan Mingpu; Zhang Jianhua; Jiang Mingyi; OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice. Molecular plant 2012:5
PMID [22869603]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India