Rice gene details
Searching for LOC_Os01g54620 [CESA4 - cellulose synthase, expressed ]
with PubMed Id 12970476

  Search entire database for LOC_Os01g54620
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g54620.1 990 173 983 PF03552.6 Cellulose_synt
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009607 response to biotic stimulus (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0006629 lipid metabolic process (RGAP)
8 GO:0019748 secondary metabolic process (RGAP)
9 GO:0005975 carbohydrate metabolic process (RGAP)
Cellular component
Not found
1 GO:0005618 cell wall (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-2881 cytokinins 7-N-glucoside biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQF001 grain shattering
2 AQDY026 culm length
3 AQDY024 culm length
4 AQDY025 culm length
5 AQDY023 culm length
6 AQDY022 culm length
7 AQDY021 culm length
8 AQBV009 leaf angle
9 CQQ24 root thickness
10 CQQ1 root weight
11 AQCU132 leaf length
12 AQAQ008 blast disease resistance
13 AQGA029 gelatinization temperature
14 CQAR4 seed number
15 CQAR2 spikelet number
16 CQAR3 spikelet density
17 CQAR1 plant height
18 AQHP001 root thickness
19 AQBM009 green plantlet yield frequency
20 AQGB107 chalkiness of endosperm
21 AQGB075 chalkiness of endosperm
22 AQGB074 chalkiness of endosperm
23 AQGB073 chalkiness of endosperm
24 AQGB072 chalkiness of endosperm
25 AQDQ005 spikelet fertility
26 AQDQ006 seed weight
27 AQFQ006 pre-flowering floret abortion
28 CQAR6 spikelet density
29 CQAR5 spikelet number
30 AQHH013 plant height
31 AQHH007 plant height
32 AQHG001 zinc sensitivity
33 AQED035 seed set percent
34 AQCW004 chlorophyll content
35 CQAS8 seed number
36 CQAS12 seed number
37 CQAS11 spikelet number
38 CQAS10 1000-seed weight
39 CQN1 nadh-dependent glutamate synthase content
40 CQN4 soluble protein content
41 AQCS004 ultraviolet-b resistance
42 AQED013 plant height
43 AQED012 plant height
44 CQAE5 plant height
45 CQAE24 grain yield per plant
46 CQAE20 1000-grain weight
47 CQAE19 1000-grain weight
48 CQAE15 grain number
49 AQE068 plant height
50 AQFP016 culm strength
51 AQBK040 seed number
52 CQC1 plant height
53 AQBK003 plant height
54 AQBK008 days to heading
55 AQBK044 seed set percent
56 AQCR001 grain yield
57 AQCS001 ultraviolet-b resistance
58 CQG1 adaxial stomatal frequency
59 AQEN001 blast disease resistance
60 CQX6 culm length
61 CQX21 internode length
62 CQN51 spikelet number
63 CQN5 soluble protein content
64 CQN43 panicle weight
65 CQN26 leaf senescence
66 CQN49 spikelet number
67 CQN3 soluble protein content
68 CQE3 plant height
69 CQE2 plant height
70 CQE6 specific leaf area
71 CQF2 soluble protein content
72 AQCW010 H2O2 content
73 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (-)
3 PO:0007089 stem elongation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000595 second stem internode (+)
2 PO:0000003 whole plant (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0025034 leaf (-)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000375 cellulose content (+)
2 MCT:1000533 cell wall thickness (+)
3 TO:0000207 plant height (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Tanaka Katsuyuki; Murata Kazumasa; Yamazaki Muneo; Onosato Katsura; Miyao Akio; Hirochika Hirohiko; Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant physiology 2003:133
PMID [12970476]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India