Rice gene details
Searching for LOC_Os01g72370 [helix-loop-helix DNA-binding domain containing protein, expressed ]
with PubMed Id 24798203

  Search entire database for LOC_Os01g72370
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g72370.1 249 69 121 PF00010.18 HLH
2 LOC_Os01g72370.2 249 69 121 PF00010.18 HLH
3 LOC_Os01g72370.3 248 69 120 PF00010.18 HLH
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  13
N22InfloresenceFC
  2
N22 Root FC
  -24
IR64 Flag-leaf FC
  -13
IR64InfloresenceFC
  2
IR64 Root FC
  -5

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDM003 spikelet sterility
2 AQQ025 seed weight
3 AQHR007 tiller number
4 AQGI199 total biomass yield
5 AQGI190 total biomass yield
6 AQGI156 biomass yield
7 AQGI109 biomass yield
8 AQGI099 biomass yield
9 AQFW171 spikelet number
10 AQFW119 spikelet fertility
11 AQFW071 days to heading
12 AQCU192 plant height
13 AQFW001 days to heading
14 AQCU112 days to heading
15 AQAG014 tiller number
16 AQAG008 tiller number
17 AQAC046 seed weight
18 AQAC017 biomass yield
19 AQAC009 total biomass yield
20 CQAW1 root number
21 AQFD016 tiller bud dormancy
22 AQEP002 seedling vigor
23 DQC3 root number
24 AQD016 leaf drying
25 AQO077 root number
26 AQC003 root number
27 AQGB033 grain width
28 CQE5 leaf height
29 CQAS7 spikelet density
30 CQAS6 spikelet number
31 CQAS5 panicle number
32 CQAS4 panicle length
33 CQAS3 days to maturity
34 AQEP001 seedling vigor
35 CQN1 nadh-dependent glutamate synthase content
36 CQN4 soluble protein content
37 AQCS004 ultraviolet-b resistance
38 AQBK040 seed number
39 AQCS001 ultraviolet-b resistance
40 CQN49 spikelet number
41 CQN3 soluble protein content
42 CQE3 plant height
43 CQE2 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India