Rice gene details
Searching for LOC_Os03g44380 [9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed ]
with PubMed Id 20838584
  Search entire database for LOC_Os03g44380
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g44380.1 609 108 601 PF03055.7 RPE65
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  -2
N22 Root FC
  -2
IR64 Flag-leaf FC
  7
IR64InfloresenceFC
  27
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0006950 response to stress (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
5 GO:0008152 metabolic process (RGAP)
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0009987 cellular process (RGAP)
8 GO:0006629 lipid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-1042 glycolysis IV (plant cytosol)

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 AQGJ020 leaf nitrogen content
4 AQHE004 root length
5 DQC15 penetrated to total root ratio
6 DQC8 penetrated root number
7 AQDY054 panicle length
8 AQFE071 100-grain weight
9 AQFE072 100-grain weight
10 AQFE073 100-grain weight
11 CQE18 yield
12 AQDY051 culm length
13 CQAS27 plant height
14 CQE26 carbon content
15 CQE27 grain number
16 CQF5 soluble protein content
17 AQAL004 deep root dry weight
18 AQAL010 deep root to shoot ratio
19 AQGC006 penetrated root number
20 AQGC012 penetrated root number
21 AQGC015 root penetration index
22 AQDL005 stomatal closure time
23 AQF008 seed dormancy
24 AQF026 seed dormancy
25 AQF043 awn length
26 AQF060 anther length
27 CQAH11 seed dormancy
28 CQAH12 seed dormancy
29 CQE19 specific leaf area

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Bases
involved in interaction		 Reference point cis-elements [PLACE Id]
1 LOC_Os04g52090 - --- LOC_Os03g44380 - 1 to -1000 TrSS Transcriptional activity assay
2 LOC_Os04g52090 - --- LOC_Os03g44380 - - - - S000430 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
      TSS - Transcriptional start site
TrSS - Translational start site		 TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

1  Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6
PMID [20838584]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India