Rice gene details
Searching for LOC_Os03g60080 [NAC domain-containing protein 67, putative, expressed ]
with PubMed Id 22551450

  Search entire database for LOC_Os03g60080
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g60080.1 317 17 143 PF02365.7 NAM
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  7
N22InfloresenceFC
  2
N22 Root FC
  -2
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  8
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009414 response to water deprivation  
3 GO:0009633 drought tolerance  
4 GO:0009651 response to salt stress  
5 GO:0042538 hyperosmotic salinity response  
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
8 GO:0007275 multicellular organismal development (RGAP)
9 GO:0006950 response to stress (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 EO:0007383 watering regimen (+)
4 EO:0007404 drought environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE26 carbon content
2 CQE27 grain number
3 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
3 PO:0007632 seed maturation stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0000372 metaxylem (+)
3 PO:0005702 aerenchyma (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009025 vascular leaf (+)
7 PO:0025034 leaf (+)
8 PO:0025197 stele (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000015 photochemical efficiency (+)
2 MCT:1000228 grain filling rate (+)
3 MCT:1000390 stele size (+)
4 MCT:1000397 root diameter (+)
5 MCT:1000506 spikelet number per panicle (+)
6 MCT:1000539 metaxylem vessel size (+)
7 MCT:1000540 cortical aerenchyma size (+)
8 TO:0000040 panicle length (+)
9 TO:0000078 root dry weight (+)
10 TO:0000085 leaf rolling (+)
11 TO:0000152 panicle number (+)
12 TO:0000227 root length (+)
13 TO:0000233 root volume (+)
14 TO:0000447 filled grain number (+)
15 TO:0000456 spikelet number (+)
16 TO:0000576 stem length (+)
17 TO:0000590 grain weight (+)
18 TO:0000592 1000-dehulled grain weight (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Redillas Mark C F R; Jeong Jin S; Kim Youn S; Jung Harin; Bang Seung W; Choi Yang D; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. Plant biotechnology journal 2012:10
PMID [22551450]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India