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Searching for LOC_Os04g52090
[AP2 domain containing protein, expressed ] |
with PubMed Id 20838584
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Search entire database for LOC_Os04g52090 |
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os04g52090.1 |
223 |
24 |
75 |
PF00847.12 |
AP2 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000107 |
post-germination stage |
(+) |
2 |
MCP:1000518 |
seedling development stage |
(+) |
3 |
MCP:1000521 |
mature plant stage |
(+) |
4 |
PO:0007130 |
B reproductive growth |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Bases
involved in interaction |
Reference point |
cis-elements [PLACE Id] |
1 |
LOC_Os04g52090 |
- |
--- |
LOC_Os03g44380 |
- |
1 to -1000 |
TrSS |
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Transcriptional activity assay |
2 |
LOC_Os04g52090 |
- |
--- |
LOC_Os05g40384 |
- |
1 to -2498 |
TrSS |
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Transcriptional activity assay |
3 |
LOC_Os04g52090 |
- |
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LOC_Os03g44380 |
- |
- - |
- |
S000430  |
Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA) |
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TSS - Transcriptional start site
TrSS - Translational start site |
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS |
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Related publications [Sorted by year] |
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1 |
Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6
PMID [20838584]
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