Rice gene details
Searching for LOC_Os06g02520 [interacting protein of DMI3, putative, expressed ]
with PubMed Id 23777258
  Search entire database for LOC_Os06g02520
Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os06g02520.1 509 204 221 seg
2 LOC_Os06g02520.1 509 443 509 coiled-coil
3 LOC_Os06g02520.1 509 486 503 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -4
N22InfloresenceFC
  -2
N22 Root FC
  -3
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  1
IR64 Root FC
  -7

Functional details
Molecular Function
Not found
Biological process
Not found
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQGE029 grain weight
8 AQGE033 cooked kernel elongation

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
2 PO:0000006 plant protoplast (+)
3 PO:0009047 stem (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000034 superoxide dismutase (SOD) activity (+)
2 MCT:1000038 catalase (CAT) activity (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Shi Ben; Ni Lan; Liu Yanpei; Zhang Aying; Tan Mingpu; Jiang Mingyi; OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice. Plant, cell & environment 2014:37
PMID [23777258]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India