Rice gene details
Searching for LOC_Os07g05940 [9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed ]
with PubMed Id 17205969

  Search entire database for LOC_Os07g05940
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g05940.1 583 76 575 PF03055.7 RPE65
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  16
N22InfloresenceFC
  47
N22 Root FC
  -2
IR64 Flag-leaf FC
  15
IR64InfloresenceFC
  132
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0030912 response to deep water  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0006629 lipid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 MCE:1000010 submergence stress (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-695 abscisic acid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQE48 plant height
5 CQE49 plant height
6 CQE50 specific leaf area
7 CQN16 soluble protein content
8 CQN35 leaf senescence
9 CQN36 leaf senescence
10 AQED046 1000-seed weight
11 AQEE024 colored grain percentage
12 AQEE026 colored grain percentage
13 AQEE028 colored grain percentage
14 AQEE030 colored grain percentage
15 AQEE032 colored grain percentage
16 AQEE034 colored grain percentage
17 AQEE036 colored grain percentage
18 AQEE038 colored grain percentage
19 CQAS81 days to maturity
20 AQED003 days to heading
21 AQEE007 colored grain percentage
22 AQEE010 colored grain percentage
23 CQAW24 root number
24 CQAX8 plant height
25 CQAS91 yield
26 AQFA017 brown rice yield
27 AQF068 anther length
28 CQAH33 seed dormancy
29 AQBP004 gel consistency
30 AQAC008 germination speed
31 AQAF031 blast disease resistance
32 AQAF032 blast disease resistance
33 AQAG048 1000-seed weight
34 AQCB013 filled grain number
35 AQCQ018 1000-seed weight
36 AQCQ025 grain yield per plant
37 AQCQ041 1000-seed weight
38 AQEY012 1000-seed weight
39 AQEY018 1000-seed weight
40 AQGE011 grain width
41 AQGI230 total biomass yield
42 AQY003 plant height
43 CQAJ1 yield
44 CQAJ12 grain weight
45 CQAJ18 tiller number
46 CQAJ27 grain weight
47 CQAJ5 tiller number
48 CQAJ8 grain number
49 CQAL25 grain length
50 CQE51 space
51 CQE52 space to culm ratio
52 AQEM004 salt sensitivity
53 AQEM005 salt sensitivity
54 AQEM010 salt sensitivity
55 AQEM011 salt sensitivity
56 CQAD5 allelopathic effect

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Saika Hiroaki; Okamoto Masanori; Miyoshi Kentaro; Kushiro Tetsuo; Shinoda Shoko; Jikumaru Yusuke; Fujimoto Masaru; Arikawa Taku; Takahashi Hirokazu; Ando Miho; Arimura Shin-Ichi; Miyao Akio; Hirochika Hirohiko; Kamiya Yuji; Tsutsumi Nobuhiro; Nambara Eiji; Nakazono Mikio; Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice. Plant & cell physiology 2007:48
PMID [17205969]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India