Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os08g34170 [CAF1 family ribonuclease containing protein, putative, expressed ] with PubMed Id 24805883   Search entire database for LOC_Os08g34170 Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os08g34170.1 289 19 252 PF04857.12 CAF1   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   -1 N22InfloresenceFC   2 N22 Root FC   3 IR64 Flag-leaf FC   2 IR64InfloresenceFC   1 IR64 Root FC   5 Functional details Molecular Function S. No. GO Id GO Description 1 GO:0004518 nuclease activity (RGAP) 2 GO:0003676 nucleic acid binding (RGAP) Biological process S. No. GO Id GO Description 1 GO:0009408 response to heat   2 GO:0009409 response to cold   3 GO:0009651 response to salt stress   4 GO:0009737 response to abscisic acid stimulus   5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP) Cellular component S. No. GO Id GO Description 1 GO:0005634 nucleus (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007048 sodium chloride regimen (+) 2 EO:0007105 abscisic acid regimen (+) 3 EO:0007173 warm/hot temperature regimen (+) 4 EO:0007174 cold temperature regimen (+) 5 EO:0007404 drought environment (+) Metabolic Pathway details Not found QTL details S. No. QTL Id QTL Associated Trait 1 CQN39 leaf senescence 2 AQBK019 days to heading 3 CQAP1 scent 4 CQN20 soluble protein content 5 CQN37 leaf senescence 6 CQN38 leaf senescence 7 CQAS102 spikelet number 8 CQAS103 seed number 9 CQAS104 yield 10 CQAS92 plant height 11 CQAS93 days to heading 12 CQAS94 days to maturity 13 CQAS97 spikelet number 14 CQAS98 spikelet density 15 CQAS99 seed number 16 AQCF042 filled grain number 17 AQCF043 spikelet number 18 AQDQ051 spikelet number 19 AQDQ052 plant height 20 AQDQ053 panicle length 21 AQDQ054 panicle length 22 CQAX35 plant height 23 CQAS96 panicle number 24 AQBK001 days to heading 25 CQAS100 seed set percent 26 CQAS101 1000-seed weight 27 CQAS95 panicle length 28 CQC6 days to heading 29 AQGD022 awn length 30 CQE65 plant height 31 CQE66 plant height 32 AQFW094 leaf length 33 AQCE030 primary branch length 34 AQCE039 primary branch 35 AQFR029 seedling vigor 36 AQAP008 brown planthopper resistance 37 AQAP009 brown planthopper resistance 38 AQAP010 brown planthopper resistance 39 AQAP033 brown planthopper resistance 40 AQCU113 days to heading 41 AQCU174 spikelet fertility 42 AQCU224 leaf width 43 AQFW128 spikelet fertility 44 AQFV020 seedling vigor 45 AQFV021 seedling vigor 46 AQFV022 seedling vigor 47 AQFW035 leaf width 48 AQBS019 plant height 49 AQBS026 panicle length 50 AQBS046 grain number 51 AQBS067 grain yield per panicle 52 CQE67 plant height 53 AQBC065 tiller angle 54 AQBC066 tiller angle 55 AQBC067 tiller angle 56 AQBC068 tiller angle 57 AQDP005 iron sensitivity 58 AQEA262 days to heading 59 AQEA263 days to heading 60 AQEA264 days to heading 61 AQEA265 days to heading 62 AQEA266 days to heading 63 AQEA267 days to heading 64 AQEA268 days to heading 65 AQEA269 days to heading 66 AQEA270 days to heading 67 AQEA271 days to heading 68 AQEA272 days to heading 69 CQK10 panicle number 70 CQL8 relative root length 71 CQL9 relative root length 72 AQFF044 spikelet sterility 73 CQAV6 osmotic adjustment capacity 74 CQAV7 osmotic adjustment capacity 75 CQAV9 osmotic adjustment capacity 76 CQAW25 tiller number 77 CQAW26 root number 78 AQDQ055 filled grain number 79 AQEJ036 leaf area 80 AQEJ038 leaf area 81 AQEJ040 leaf width 82 AQEJ068 leaf width 83 AQEJ070 leaf width 84 AQGB056 chalkiness of endosperm 85 AQGB057 chalkiness of endosperm 86 AQGB058 chalkiness of endosperm 87 AQGB059 chalkiness of endosperm 88 AQGB060 chalkiness of endosperm 89 AQGB061 chalkiness of endosperm 90 AQGB062 chalkiness of endosperm 91 AQGB063 chalkiness of endosperm 92 AQGB076 chalkiness of endosperm 93 AQGB077 chalkiness of endosperm 94 AQGB078 chalkiness of endosperm 95 AQGB079 chalkiness of endosperm 96 AQGB080 chalkiness of endosperm 97 AQGB081 chalkiness of endosperm 98 AQGB082 chalkiness of endosperm 99 AQGB083 chalkiness of endosperm 100 AQGB088 chalkiness of endosperm 101 AQGB089 chalkiness of endosperm 102 AQGB090 chalkiness of endosperm 103 AQGB091 chalkiness of endosperm 104 AQGB092 chalkiness of endosperm 105 AQGB093 chalkiness of endosperm 106 AQGB094 chalkiness of endosperm 107 AQGB095 chalkiness of endosperm 108 CQA24 vegetative growth time 109 CQA25 reproductive growth time 110 AQF003 grain shattering 111 AQF015 seed dormancy 112 AQF049 awn length 113 AQF129 cold tolerance 114 CQE68 photosynthetic ability 115 CQF9 soluble protein content 116 CQF11 rubisco content 117 CQAR36 days to heading 118 CQAR37 plant height 119 AQBZ014 plant height 120 CQR9 flour color 121 AQE082 panicle number 122 AQGS035 grain yield 123 AQGS038 grain yield 124 EQC0032 seed shattering 125 AQEE003 seed density 126 AQBM003 callus induction 127 AQDJ003 plant height 128 AQDJ015 internode length 129 CQB30 plant height 130 AQO017 root to shoot ratio 131 AQO025 root to shoot ratio 132 AQDX012 osmotic adjustment capacity 133 AQEI067 leaf senescence Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) 2 MCP:1000521 mature plant stage (+) 3 PO:0001054 4 leaf senescence stage (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0005004 shoot node (+) 2 PO:0009005 root (+) 3 PO:0009006 shoot system (+) 4 PO:0009051 spikelet (+) 5 PO:0020040 leaf base (+) 6 PO:0020104 leaf sheath (+) 7 PO:0020122 inflorescence axis (+) 8 PO:0025034 leaf (+) 9 PO:0025142 leaf tip (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details Not found Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Chou Wei-Lun; Huang Li-Fen; Fang Jhen-Cheng; Yeh Ching-Hui; Hong Chwan-Yang; Wu Shaw-Jye; Lu Chung-An; Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa. Plant molecular biology 2014:85 PMID [24805883] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India