Rice gene details
Searching for LOC_Os09g28390 [cytochrome P450, putative, expressed ]
with PubMed Id 17205969

  Search entire database for LOC_Os09g28390
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os09g28390.1 501 45 474 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  9
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  67

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0019825 oxygen binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0030912 response to deep water  
2 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000010 submergence stress (-)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5271 phaseic acid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK037 spikelet number
2 CQE74 shoot elongation rate
3 AQBM007 green plantlet differentiation frequency
4 AQBM010 green plantlet yield frequency
5 AQAL006 deep root dry weight
6 CQAX26 plant height
7 AQEP006 seedling vigor
8 AQEM007 salt sensitivity
9 AQGG004 callus induction
10 AQAD002 sheath blight disease resistance
11 AQGI088 root dry weight
12 AQGI097 root dry weight
13 AQHR023 tiller number
14 AQAF038 blast disease resistance
15 AQAF039 blast disease resistance
16 AQAI004 leaf area
17 AQCA004 seed length
18 AQFJ010 panicle number
19 AQFJ049 panicle length
20 CQAS110 spikelet number
21 AQDY116 panicle length
22 AQDY117 panicle length
23 AQDY118 tiller number
24 AQHE006 root length
25 AQHE052 root weight
26 AQHE055 root weight
27 AQHE059 root weight
28 AQHE085 root weight
29 AQHE109 total biomass yield
30 AQHE134 plant height
31 AQHE140 plant height
32 AQF004 grain shattering
33 AQF040 seed dormancy
34 AQF071 anther length
35 AQF102 KClO3 resistance
36 AQFE116 tiller angle
37 CQAS108 panicle length
38 AQHF039 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Saika Hiroaki; Okamoto Masanori; Miyoshi Kentaro; Kushiro Tetsuo; Shinoda Shoko; Jikumaru Yusuke; Fujimoto Masaru; Arikawa Taku; Takahashi Hirokazu; Ando Miho; Arimura Shin-Ichi; Miyao Akio; Hirochika Hirohiko; Kamiya Yuji; Tsutsumi Nobuhiro; Nambara Eiji; Nakazono Mikio; Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice. Plant & cell physiology 2007:48
PMID [17205969]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India