Rice gene details
Searching for LOC_Os12g42280 [9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed ]
with PubMed Id 24976122

  Search entire database for LOC_Os12g42280
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os12g42280.1 614 110 606 PF03055.7 RPE65
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  8
N22 Root FC
  -3
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0006629 lipid metabolic process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-1042 glycolysis IV (plant cytosol)
2 PWY-361 phenylpropanoid biosynthesis
3 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)
4 PWY-695 abscisic acid biosynthesis

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000330 pre-anthesis stage (+)
3 MCP:1000376 15 days post-anthesis stage (+)
4 MCP:1000454 10 days post-anthesis stage (+)
5 MCP:1000473 20 days post-anthesis stage (+)
6 MCP:1000477 25 days post-anthesis stage (+)
7 MCP:1000505 30 days post-anthesis stage (+)
8 PO:0007022 imbibition (+)
9 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schl├Ąppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India