Rice gene details
Searching for AAA27722 [ green-fluorescent protein ]

Functional details
Molecular Function
Not found
Biological process
Not found
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007270 continuous dark (no light) regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 EO:0007373 mechanical damage (+)
6 EO:0007404 drought environment (+)
7 MCE:1000335 spermine (+)
8 MCE:1000336 thermospermine (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000445 pre-initiation stage of crown root primordium (+)
2 MCP:1000494 inflorescence 10cm stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000521 mature plant stage (+)
5 PO:0001040 dry seed stage (+)
6 PO:0007041 inflorescence emergence from flag leaf sheath (+)
7 PO:0007057 0 germination (+)
8 PO:0007088 2.04 main shoot and axillary shoots visible at four nodes (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000159 root base (+)
2 MCP:1000220 bundle sheath cell (+)
3 PO:0000001 embryo proper (+)
4 PO:0000016 lateral root primordium (+)
5 PO:0000017 leaf primordium (+)
6 PO:0000025 root tip (+)
7 PO:0000027 lateral root tip (+)
8 PO:0000043 crown root (+)
9 PO:0000074 parenchyma cell (+)
10 PO:0000293 guard cell (+)
11 PO:0005004 shoot node (+)
12 PO:0005005 shoot internode (+)
13 PO:0005020 vascular bundle (+)
14 PO:0005052 plant callus (+)
15 PO:0005360 aleurone layer (+)
16 PO:0005645 leaf mesophyll (+)
17 PO:0006085 root meristem (+)
18 PO:0006339 juvenile leaf (+)
19 PO:0008039 stem base (+)
20 PO:0009000 pulvinus (+)
21 PO:0009005 root (+)
22 PO:0009006 shoot system (+)
23 PO:0009010 seed (+)
24 PO:0009025 vascular leaf (+)
25 PO:0009029 stamen (+)
26 PO:0009036 lodicule (+)
27 PO:0009037 lemma (+)
28 PO:0009038 palea (+)
29 PO:0009046 flower (+)
30 PO:0009047 stem (+)
31 PO:0009051 spikelet (+)
32 PO:0009062 gynoecium (+)
33 PO:0009066 anther (+)
34 PO:0009067 filament (+)
35 PO:0009089 endosperm (+)
36 PO:0020031 radicle (+)
37 PO:0020032 plumule (+)
38 PO:0020103 flag leaf (+)
39 PO:0020104 leaf sheath (+)
40 PO:0020105 ligule (+)
41 PO:0020106 auricle (+)
42 PO:0020121 lateral root (+)
43 PO:0020123 root cap (+)
44 PO:0020141 stem node (+)
45 PO:0020142 stem internode (+)
46 PO:0025034 leaf (+)
47 PO:0025181 root elongation zone (+)
48 PO:0025197 stele (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Liu Taibo; Kim Dong Wook; Niitsu Masaru; Berberich Thomas; Kusano Tomonobu; Oryza sativa polyamine oxidase 1 back-converts tetraamines, spermine and thermospermine, to spermidine. Plant cell reports 2014:33
PMID [24105034]


2  Bang Seung Woon; Park Su-Hyun; Jeong Jin Seo; Kim Youn Shic; Jung Harin; Ha Sun-Hwa; Kim Ju-Kon; Characterization of the stress-inducible OsNCED3 promoter in different transgenic rice organs and over three homozygous generations. Planta 2013:237
PMID [23007553]


3  Kitomi Yuka; Ito Hiroko; Hobo Tokunori; Aya Koichiro; Kitano Hidemi; Inukai Yoshiaki; The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. The Plant Journal 2011:67
PMID [21481033]


4  Sasaki Akimasa; Yamaji Naoki; Xia Jixing; Ma Jian Feng; OsYSL6 is involved in the detoxification of excess manganese in rice. Plant Physiology 2011:157
PMID [21969384]


5  Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


6  Su Chin-Fen; Wang Yi-Chieh; Hsieh Tsai-Hung; Lu Chung-An; Tseng Tung-Hai; Yu Su-May; A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiology 2010:153
PMID [20130099]


7  Takasaki Hironori; Maruyama Kyonoshin; Kidokoro Satoshi; Ito Yusuke; Fujita Yasunari; Shinozaki Kazuo; Yamaguchi-Shinozaki Kazuko; Nakashima Kazuo; The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Molecular Genetics and Genomics 2010:284
PMID [20632034]


8  Song Yaling; You Jun; Xiong Lizhong; Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Molecular Biology 2009:70
PMID [19266169]


9  Hu Honghong; You Jun; Fang Yujie; Zhu Xiaoyi; Qi Zhuyun; Xiong Lizhong; Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice. Plant Molecular Biology 2008:67
PMID [18273684]


10  Hu Honghong; Dai Mingqiu; Yao Jialing; Xiao Benze; Li Xianghua; Zhang Qifa; Xiong Lizhong; Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proceedings of The National Academy of Sciences of The United States of America 2006:103
PMID [16924117]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India