Rice gene details
Searching for AAS13688 [ zinc finger protein LSD1 ]


Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0040029 "regulation of gene expression, epigenetic"  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (+)
2 EO:0007198 water environment (+)
3 MCE:1000170 paclobutrazol (PBZ) (+)
4 MCE:1000342 ent-kaurene regimen (+)
5 MCE:1000343 ent-kaurene acid regimen (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009010 seed (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0009089 endosperm (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000034 superoxide dismutase (SOD) activity (+)
2 MCT:1000078 DNA fragmentation (+)
3 MCT:1000101 seed germination (+)
4 MCT:1000569 radicle emergence (+)
5 MCT:1000640 coleoptile emergence (+)
6 MCT:1000641 ent-kaurene content (+)
7 TO:0001007 coleoptile length (+)
8 TO:0002675 gibberellic acid content (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 AAS13688 - --- LOC_Os07g08420 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 AAS13688 - --- LOC_Os07g08420 - - - - Protein-DNA interaction analysis : Firefly luciferase complementation imaging (LCI) assay
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India