|
Searching for AAS13688
[ zinc finger protein LSD1 ] |
|
|
Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
|
Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0040029 |
"regulation of gene expression, epigenetic" |
|
|
Cellular component
S. No. |
GO Id |
GO Description |
|
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007069 |
gibberellic acid regimen |
(+) |
2 |
EO:0007198 |
water environment |
(+) |
3 |
MCE:1000170 |
paclobutrazol (PBZ) |
(+) |
4 |
MCE:1000342 |
ent-kaurene regimen |
(+) |
5 |
MCE:1000343 |
ent-kaurene acid regimen |
(+) |
|
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007022 |
imbibition |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
1 |
AAS13688 |
- |
--- |
LOC_Os07g08420 |
- |
--- |
Protein-protein interaction analysis : Yeast two-hybrid analysis |
|
Interaction type: protein-DNA
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Bases
involved in interaction |
Reference point |
cis-elements [PLACE Id] |
1 |
AAS13688 |
- |
--- |
LOC_Os07g08420 |
- |
- - |
- |
|
Protein-DNA interaction analysis : Firefly luciferase complementation imaging (LCI) assay |
|
|
|
TSS - Transcriptional start site
TrSS - Translational start site |
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS |
|
|
|
Related publications [Sorted by year] |
|
1 |
Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]
 |
|
|
|