Rice gene details
Searching for ABD52007 [ stress-induced transcription factor NAC1 ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding  
2 GO:0003700 sequence-specific DNA binding transcription factor activity  
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009628 response to abiotic stimulus  
4 GO:0009633 drought tolerance  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0009819 drought recovery  
8 GO:0042538 hyperosmotic salinity response  
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007383 watering regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000016 polyethylene glycol (PEG) treatment (+)
7 MCE:1000024 drought stress in PVC pipes (+)
8 MCE:1000075 recovery treatment (+)
9 MCE:1000101 severe drought stress in sheltered field (+)
10 MCE:1000102 moderate stress in open field (+)
11 MCE:1000285 recovery treatment from salt stress (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0005052 plant callus (+)
3 PO:0008037 seedling (+)
4 PO:0009010 seed (+)
5 PO:0009025 vascular leaf (+)
6 PO:0009051 spikelet (+)
7 PO:0020103 flag leaf (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000245 callus fresh weight (+)
3 MCT:1000501 percentage of closed stomata (+)
4 MCT:1000504 seedling fresh weight (+)
5 TO:0000019 seedling height (+)
6 TO:0000078 root dry weight (+)
7 TO:0000136 relative water content (+)
8 TO:0000180 spikelet fertility (+)
9 TO:0000207 plant height (+)
10 TO:0000227 root length (+)
11 TO:0000396 grain yield (+)
12 TO:0000446 leaf drying (+)
13 TO:0000455 seed set percent (+)
14 TO:0000458 drought recovery (+)
15 TO:0000495 chlorophyll content (+)
16 TO:0000503 leaf rolling time (+)
17 TO:0001018 transpiration rate (+)
18 TO:0001027 net photosynthetic rate (+)
19 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 ABD52007 - --- LOC_Os02g32520 - - - - Protein-DNA interaction analysis : Yeast one-hybrid analysis
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Luo Chengke; Guo Chiming; Wang Wujing; Wang Liangjiang; Chen Liang; Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant cell reports 2014:33
PMID [24247850]


Saad Abu Sefyan I; Li Xu; Li He-Ping; Huang Tao; Gao Chun-Sheng; Guo Mao-Wei; Cheng Wei; Zhao Guang-Yao; Liao Yu-Cai; A rice stress-responsive NAC gene enhances tolerance of transgenic wheat to drought and salt stresses. Plant science 2013: 203-204C
PMID [23415326]


Hu Honghong; Dai Mingqiu; Yao Jialing; Xiao Benze; Li Xianghua; Zhang Qifa; Xiong Lizhong; Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proceedings of The National Academy of Sciences of The United States of America 2006:103
PMID [16924117]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India