Rice gene details
Searching for AFB77198 [dehydration responsive element binding protein 2a (DREB2A) mRNA, complete cds ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding  
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009651 response to salt stress  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0042538 hyperosmotic salinity response  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009010 seed (+)
3 PO:0020127 primary root (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000101 seed germination (+)
2 MCT:1000208 leaf whitening (+)
3 MCT:1000381 leaf browning (+)
4 MCT:1000397 root diameter (+)
5 MCT:1000519 development of fibrous root system (+)
6 TO:0000085 leaf rolling (+)
7 TO:0000340 total soluble sugar content (+)
8 TO:0000430 germination rate (+)
9 TO:0001013 lateral root number (+)
10 TO:0002681 leaf curling (+)
11 TO:0002712 stay green trait (+)
12 TO:0006002 proline content (+)
13 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 AFB77198 - --- - - - - S000153 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Zhang Xiu-Xiang; Tang Yu-Juan; Ma Qi-Bin; Yang Cun-Yi; Mu Ying-Hui; Suo Hai-Cui; Luo Lai-Hui; Nian Hai; OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean. PloS one 2013:8
PMID [24376625]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India