Rice gene details
Searching for BAA04066 [ VP1 protein ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016563 transcription activator activity  
Biological process
S. No. GO Id GO Description
1 GO:0010468 regulation of gene expression  
Cellular component
S. No. GO Id GO Description

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000454 10 days post-anthesis stage (+)
2 MCP:1000461 13 days post-anthesis stage (+)
3 MCP:1000472 11 days post-anthesis stage (+)
4 MCP:1000473 20 days post-anthesis stage (+)
5 MCP:1000518 seedling development stage (-)
6 PO:0001081 F mature embryo stage (+)
7 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (+)
2 PO:0009006 shoot system (-)
3 PO:0009009 plant embryo (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 AAB65841 - --- BAA04066 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
2 ABM90394 - --- BAA04066 - --- Protein-protein interaction analysis : Pull Down Assay
3 ABM90395 - --- BAA04066 - --- Protein-protein interaction analysis : Pull Down Assay
4 BAA04066 - --- BAA83740 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
5 BAA04066 - --- BAA83740 - --- Transient co-expression analysis
6 BAA83740 - --- BAA04066 - --- Transient co-expression analysis
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 BAA04066 - --- LOC_Os05g28210 - 105 to -502 - Transient co-expression analysis
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Hobo T; Kowyama Y; Hattori T; A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proceedings of the National Academy of Sciences of the United States of America 1999:96
PMID [10611387]


Hattori T; Terada T; Hamasuna S T; Sequence and functional analyses of the rice gene homologous to the maize Vp1. Plant molecular biology 1994:24
PMID [8193305]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India