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Searching for BAA04066 
[ VP1 protein ] |
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Functional details
Molecular Function
| S. No. |
GO Id |
GO Description |
| 1 |
GO:0016563 |
transcription activator activity |
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Biological process
| S. No. |
GO Id |
GO Description |
| 1 |
GO:0010468 |
regulation of gene expression |
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Cellular component
| S. No. |
GO Id |
GO Description |
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
MCP:1000454 |
10 days post-anthesis stage |
(+) |
| 2 |
MCP:1000461 |
13 days post-anthesis stage |
(+) |
| 3 |
MCP:1000472 |
11 days post-anthesis stage |
(+) |
| 4 |
MCP:1000473 |
20 days post-anthesis stage |
(+) |
| 5 |
MCP:1000518 |
seedling development stage |
(-) |
| 6 |
PO:0001081 |
F mature embryo stage |
(+) |
| 7 |
PO:0007022 |
imbibition |
(+) |
Plant tissue/organ
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
PO:0000001 |
embryo proper |
(+) |
| 2 |
PO:0009006 |
shoot system |
(-) |
| 3 |
PO:0009009 |
plant embryo |
(+) |
Others
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
| S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
| 1 |
AAB65841 |
- |
--- |
BAA04066 |
- |
--- |
Protein-protein interaction analysis : Yeast two-hybrid analysis |
| 2 |
ABM90394 |
- |
--- |
BAA04066 |
- |
--- |
Protein-protein interaction analysis : Pull Down Assay |
| 3 |
ABM90395 |
- |
--- |
BAA04066 |
- |
--- |
Protein-protein interaction analysis : Pull Down Assay |
| 4 |
BAA04066 |
- |
--- |
BAA83740 |
- |
--- |
Protein-protein interaction analysis : Yeast two-hybrid analysis |
| 5 |
BAA04066 |
- |
--- |
BAA83740 |
- |
--- |
Transient co-expression analysis |
| 6 |
BAA83740 |
- |
--- |
BAA04066 |
- |
--- |
Transient co-expression analysis |
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Interaction type: protein-DNA
| S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Bases
involved in interaction |
Reference point |
cis-elements [PLACE Id] |
| 1 |
BAA04066 |
- |
--- |
LOC_Os05g28210 |
- |
105 to -502 |
- |
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Transient co-expression analysis |
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TSS - Transcriptional start site
TrSS - Translational start site |
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS |
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| Related publications [Sorted by year] |
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| 1 |
Hobo T; Kowyama Y; Hattori T; A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proceedings of the National Academy of Sciences of the United States of America 1999:96
PMID [10611387]
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| 2 |
Hattori T; Terada T; Hamasuna S T; Sequence and functional analyses of the rice gene homologous to the maize Vp1. Plant molecular biology 1994:24
PMID [8193305]
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