Rice gene details
Searching for LOC_Os01g01610 [IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g01610.1 139 27 116 PF01521.12 Fe-S_biosyn
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  4
N22 Root FC
  8
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005198 structural molecule activity (RGAP)
2 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010039 response to iron ion  
4 GO:0010288 response to lead ion  
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000138 lead nitrate regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAL7 chalkiness of endosperm
2 CQAL3 grain width
3 CQAL26 grain width
4 AQGI217 total biomass yield
5 AQGI197 total biomass yield
6 AQGI161 biomass yield
7 AQGI132 biomass yield
8 AQGI036 root dry weight
9 AQCQ036 1000-seed weight
10 AQCQ021 grain yield per plant
11 AQCQ014 1000-seed weight
12 AQCQ009 grain number
13 AQCQ001 grain yield per plant
14 AQAI052 large vascular bundle number to leaf area ratio
15 AQAF003 blast disease resistance
16 AQAF002 blast disease resistance
17 AQAF001 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India